Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe02g00841 | ATGAGCGTCATCGACCTTTTGACCAGAGTAGACGCGATCTGCCAGAAGTATGACAAATACGACGTAGAGAAGCAGAGGGATCTCAATGTCTCCGGCGATGATGCCTTTGCTCGACTTTATGCTACTGTCGAAGCCGACATTGAAGCTGCCCTCCAGAAAGCGGAGGATGCTTCCAGAGAAAAGAATAGGGCGTCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACTAAGGCTCGATTACTGGAGGAGATCCCCAAGTTGCAGAGATTGGCTCTAAAGAGGGTGAAGGGGCTATCAACTGAAGATCTCACCACTCGAAATGATTTGGTGCTTGCATTGCCCGATAGGATTCAAGCCATACCAGATGGGACTGCTACTTCCACGAAGAAGAATGGGGGTTGGACATCCTCTGCTTCACGCACTGAAATAAAATTTGACTCAGACGGGCGATTTGATGATGAGTACTTCCAACACACTGAGGAGTCGAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGACACTCTGAAGAACATGGCTCATGATATGAATGAGGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATCGACACTAAGGTGGACAAGGCTGCATCTGATCTTAAGAATACCAACGTCAGATTAAAGCACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTTTATTGTGCATAATCTTGGGCATTGCTGCCTACCTATACAAGTAA | 786 | 46.31 | MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASREKNRASVVALNAEIRRTKARLLEEIPKLQRLALKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTATSTKKNGGWTSSASRTEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKHTVNQLRSSRNFCIDIILLCIILGIAAYLYK | 261 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 5402543 | 5404489 | - | Cp4.1LG02g00320.1 | Cpe02g00841 | 464790 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe02g00841 | 261 | Gene3D | - | 170 | 231 | - | - | |
| Cpe02g00841 | 261 | SMART | tSNARE_6 | 165 | 232 | IPR000727 | - | |
| Cpe02g00841 | 261 | SUPERFAMILY | SNARE fusion complex | 163 | 230 | - | - | |
| Cpe02g00841 | 261 | CDD | SNARE_Qc | 175 | 231 | - | - | |
| Cpe02g00841 | 261 | Pfam | SNARE domain | 207 | 256 | IPR000727 | - | |
| Cpe02g00841 | 261 | Coils | Coil | 40 | 67 | - | - | |
| Cpe02g00841 | 261 | Coils | Coil | 70 | 90 | - | - | |
| Cpe02g00841 | 261 | ProSitePatterns | Syntaxin / epimorphin family signature. | 176 | 215 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cpe02g00841 | 261 | PANTHER | SYNTAXIN | 1 | 260 | IPR045242 | - | |
| Cpe02g00841 | 261 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 170 | 232 | IPR000727 | - | |
| Cpe02g00841 | 261 | PANTHER | SYNTAXIN-73 | 1 | 260 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00841 | Cpe-Chr2:5402543 | Cpe05g00828 | Cpe-Chr5:5125039 | 9.23E-119 | dispersed | |
| Cpe02g00841 | Cpe-Chr2:5402543 | Cpe03g00174 | Cpe-Chr3:858407 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe02g00841 | K08506 | - | csv:101215905 | 483.026 |