Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00854 ATGGCGTCGTCTGGCAGCGGATTGACATTCAAACTGCATCCTCTTGTGATTGTGAACATTTCCGATCACTACACCAGGGTTAAGTCTCAGATGAATCCTCCCTCCTTAAGCAGTTCATCTCCATCCCCATGCGCCCTAAGTAATGGCGCCGATGTAGCCGATTCTGCGGACCCTTCCACTTCTCCTCCTGCTCCTAGGGTTTACGGTTGTGTTGTTGGCGTTCAGAAGGGCCGCACGGTTGAGATCTTCAACAGCTTTGAGCTTCTGTATGATCCCAAAACTCATTCACTGGACCGCACCTTCCTTGAGAAGAAGCAAGAGCTCTATAAGAAAGTTTTTCCCCACTTCTACATTTTGGGTTGGTATTCTACTGGGAGTGATGCCGTTGAGTCTGACATGCATATCCATAAGGCTTTGATGGATATCAATGAAAGTCCTGTCTATGTTCTTCTTGATCCTTCCATTAATCATGCTCAAAAGGATCTCCCAGTTACTATATACGAGAGTGAACTACATCTTATAGAAGGGATCCCCCAGCTAATTTTTGTTCGCTCAAGTTACACTATAGAGACGGTAGAAGCTGAGCGAATTTCTGTTGATCATGTTGCACATTTGAAACCATCTGATGGAGGCTCTGCTGCAACTCAACTGGCTGCTCACCTTGCGGGTATTCACAGTGCCATCAAAATGCTGAACAGCAGAATCAGGATACTTCACAGTTATCTTCTGGCAATGCAAAATGGTGATATTCCTCTGGAGAATTCTCTACTAAGACAAGTGTCTAGTTTACTCAGAAGATTACCAGTTATTGAATCAGAAAAGTTTCGAGATGATTTCTTGACGGAATATACTGACACAATGTTGATTACGTACCTAGCAATGTCCACTAATTGCTCAAGGTGTCAAGCTACATTGAATTTGAAAACA 927 43.69 MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSSSSPSPCALSNGADVADSADPSTSPPAPRVYGCVVGVQKGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAVESDMHIHKALMDINESPVYVLLDPSINHAQKDLPVTIYESELHLIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYLLAMQNGDIPLENSLLRQVSSLLRRLPVIESEKFRDDFLTEYTDTMLITYLAMSTNCSRCQATLNLKT 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5558019 5569612 + Cp4.1LG02g00210.1 Cpe02g00854 464803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00854 309 MobiDBLite consensus disorder prediction 29 63 - -
Cpe02g00854 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 303 - -
Cpe02g00854 309 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 6 145 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cpe02g00854 309 Gene3D Cytidine Deaminase, domain 2 1 207 - -
Cpe02g00854 309 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 303 - -
Cpe02g00854 309 SMART pad1_6 9 172 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cpe02g00854 309 ProSiteProfiles MPN domain profile. 45 173 IPR037518 -
Cpe02g00854 309 MobiDBLite consensus disorder prediction 29 46 - -
Cpe02g00854 309 CDD MPN_CSN6 8 300 IPR033859 GO:0000338|GO:0008180
Cpe02g00854 309 Pfam Maintenance of mitochondrial structure and function 193 297 IPR024969 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00854 K12179 COPS6, CSN6; COP9 signalosome complex subunit 6 - csv:101216874 541.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00854 Cpe-Chr2:5558019 Cpe08g01213 Cpe-Chr8:8869884 3.39E-20 dispersed
Cpe02g00854 Cpe-Chr2:5558019 Cpe06g00855 Cpe-Chr6:5544896 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g802 . . . Bda09g00455 . Bpe08g01071 . . . . Cma01g01037 . Car01g00912 . . . Cpe02g00854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01230 . . Cmo01g01076 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006191 2 1 2 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00854 Cpe_Chr02 FPKM 0.0 0.846613 2.05356 2.453835 0.0 0.0 0.0 28.571915 30.009216 26.350418