Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00855 ATGGATTTGCCTCCATTTCTTTACCACCAACGGGATCAATCCAGGTATATCTCTCCTCCTCCTCCTCCTCCTCCTTCCTCCGCCCCTCTTCCTCACCCCTTTTTTCCGGACGATCCCAATTTCCACTTCCCTTCCAATCACCATCAGGTTCTTCATAACATTCCCGATAAAGGGCTAGATTTCCCTCTGCGGCCGCCACCGCCACCGCCGTCGTACCGTCATCCTCCGATTCATCCACCCCCGTCACAAGCACCGCCGCTAGGTTATAATCCCTCTCAACCACACTTCGTTGTTTCTTCCTCGATTCACGATGACCAATTGAGGTCTCCCCACCCTATTCGTGAATTTCCGCGCTCCCCTCCGCTTTCCAGTCGAGTTTCTTTCGAAGGAGGGTTTCACCGCGATTTTGTTGACCTTAATCATTCGTTCCATGAAACTCGGTTTGATGTTTCGGATCCATCGAGAGGCTCTGCGGATAATCGACCTTCAATTCCGCATTCTCCTATCGATTTTCAGCATGGAGCTGGCCACCGAGAAATTGATTACAGATCTGTCATGCCGTATCCGCCCCCTGATATGTTTAGGTATAGTTCAGGTAGTAGTTCTAGGCGGGGAGCGGAATACAATGATAGATTTCAGACAAATCCAAGAGAAGAGGTGCTACGGGGACGAGGTGAGGAGAATTATTATCACCACGATCAGCTTAAAGCTGATTCCAATATCACCTTTATGGAATCTGGAGCGATGCAGAGTCCATTATCTAGAGATAACAAATTTACTTCCGGTAGTTTTGATAAACATCGCTATGGCTCGAATTATGAAAAAGAATCTTTTAGGAGTCGTAGGAATGGTAATGTGGTGGGTAAAAATCAGAGATGGGTTCATAGCAAACAAACCTTTAGAAACATGCACAATTCGTACTCAGATGGAAGCAATGATAGAGGATATGGTGACCGTAGTGATTTTCGAATTATGTCTGGTAAGCATGGACATTCTAATCCAGAATCAGGAAAATATTACGGTGACAATAAGGATAGTATAGAAGGTTATAATGAGTACACGTCCACTCCACGGAAGCAGGTACAGAAAAAGAGTGCTTTTCTCAGAATTCAGATGGCAAATCCTTGTCACAGTAACCGAGAGAGTGAACAATTACACGATTCTGATTATTTCGATGAGAAGAATGGTTTCCACAGAGGCAAAAATCAGGTTCGATCTCAGGGCTACAGAATAGATGCAGGGAAGAAGAGACAGGGAAGTCCTATGGAGCTTGATGTTTCTTTTAAATCCAATTCGTTGGTGGCCAAGGCGATCGTGACACCAACACAGTCTGCTCCGACTTCTCATATGGATAAAATGCCTGGATATGAAAAAACTACAAATGTTTTGGTTCCCGTTCCCCACCATAACTCTACTGACTTGCATTTAACGGGAAAGAACAAGGATGATTTAGGCACAAATGATGTTACAAATCCTGCTCCATGTCCCCCAGGTTCTAAAAATGAGCTGAAAAAATCAGAAGAGAAGGCTACAGGTTGGTTGGCTGGTAATGGATCTAACAATTTAACAGATGCTTCTTTGGTTAAGGGCAATTATTCACTTAGAAAAACTAACGTTGAAAGACCTTCACAAGGAATGGTGTCAGGTATAAAAGGAAGGAATGCTTATGGAAAAGTAGCTACTGTGAGAACCATGAAGAAGAAAAAGGTTGTGAGGAAAGTAGTGAAGAAGGTAGGAAGTCCCCGACTGTATTTACAGACAAGAAACAGCAATGTTGACCCTTTGAAAGCATGTAGCTTAAAAAATATTCCGCCGGTTGCAGAAAACAAGTCTTCCACATCTGGAATGAACTCAGATCATGGTTCTGTGTTGAAGGCTTCTCAGCATGGTATGTCTGGATCACTAGATAATGGAAAAGCAGATCAGTCTGTCCTGCCTTTAACATCAGAAGAGTTTCAAGCCAACACTGATATGGGCATGGAATGTGTACCTGCAGATGATAGTAATAAAAATAACTTTGATTCTCCATTGAATCCCTTGATAAAAGAGGCAAGAGGATCTAGTAATCAAATTGAGAGAAACAGTTCTTTCATTTCCGTTCCACCTCTTTTAAATTCTAATAAGGATCTTAAACTATCAAATGGACCTAATGACTTCGATTTTGAATGTCAGAAGTCAATCAAGCCTAAACTTTGTGGGAATGAAGAAGACTTGTCACTTGAGAATGTATATAGTAAAGGGTCTAAATCTATCATGTTTTCCCTAGGAAGCAGTCAGTCTGGAATAGTGAGTTCAAATGATCCTAATATATCTGATAATCTTGTTAATGGAAATAGTTTGGCTGTTAATAAAGACGTTCCCATGGATTTTGATAATGGGGGAACTCAGGTTCAAGATAATACTTCACTTTGTGAAACTTGTTTTGCTGATGGAATTTGCCAGCAATGTGCAAACAGGGTGACTGGACCTCCTGAGACTGATGTCGTGGGAGTATCTGCAGCAAAAGTTACAATTAGCAATTCTTTGGTGGGCGTAAATCCAGAAGCATCGGAAATGCAGATTGATTCCAAAAATTTGCAAGACTATAACAGTGGACAACATACTAATCAAGATTCTGATGTCTGTCGTCAGTGTACTAATATACGAGTGAATGAGGTTCTTAACTGTGAGAGGATTGGTAGTGCAATGAGAGAATCGAAAGCTATGGATAGTTCTGTTTCACTAGGTATTAGTTCTGTAGAAAGATCTGCCAAAGCTAAGGTTTCAATTAGTGGTGGACAGGGTGAGAAATCATTGTCAAAGATGAGTAAAATTAAAAATTGTTTGGATTTTGCAGGTTCTTGTGACATCAATCAGGAGACGAATTCTGAGGATTTATGTGTACGTTCTAATTCTAAAAATTATTGTCCTTCAGAGCAGGGTGTTTCTGGTGATGGAAGCATAATAATAGATGTAAATCCTACCACCACTGAAGAGAGTCCAATGCCTGATTTCAATTTATTAGGTAAGTCGTCAAAAAATAAGTTGTCGATGGGCTTTGATGTTAATAATAGAGGAAATGAGATCAAGTCCCGAAAGAAGCGAAAGATATGCATTGCTAGTCCTGTTTTGCCTTGCCCCAGTGTTGAATCTAATGAAGGGCCTGCACTTACAGTCATCTCTAGTTTAAATGATCAGTTAACCTCTAATGTTGAGTTAATGGAAGGAGAGGAGGTTGCAGCATCTACTGTGGATGCTTTTTTCAAAGCTAGTCCTGTTTCTACAGATTGTTCGAAAGGGATCAGCAAGATGCTCGATGAGATACCGAAAAAAGAAAATTCCAAAAAAATAAATATTGATGATGGTCCTTTTGAGTATTGCTTGAAATATGAACAACCAGAAAACTCTCGCTCAATCCGGGAGGAGTTGATTGTTTCAAAATGTCAACCACTTTCTTCATTGGGAAATGAGAAAGAAGACAGCAGTAGTTCCACAATGGCACCACATCAAAGAAATGATATGGATGTAGTCATTTGTAGAAGAAAAGAACTAAATATTCATGCTGAAGCACAATCTATGCTTTGTAACAAGACTGCACAGTGGAATAGTCCTCAAGTTCCATCCTCTCAGACCTTAAATTTTTCATATCCAGAAGCAGTTAAAGCGTCTTGTAATCTTGGCCAGGATAATGTGCATCATATAGAAAGATGCACTGATGGTGGCAGCTGCCTCACTGCCAATTCTGACAATGAAATTATAGGCATTGCGAGTGATACCCAAGGGGATTTGGGTTCTCCAGAAACCTCCAATGTTCAAGGGATAGATAAATTACATTGTGAGGTATCTCTCAGAAATATTGACTTCAAAATGGATTGTGAATATGACAAAAAGGTGAAGGAGAAATCTAGTGCTGAAAATGAATTAAGGGCATCGAATGATACTTCATTTCCACAGCCTACGACCATTAATCAGAAATTAGGTTGCACCAATTCTGACAACAATTTGACTGCTGGCAAAGTAGTACCACGGGCATTGGTAGAATTTAAAAGTGGACTTCAAGCTGACAATCATTCTGCCAACTCGTGCAAAAAAAATCAGAATATGGTTTATCACAAATATCAGACAATTCCTGGTAAATCTTTTTCCACATGCACTGCTTCAAAAAAGATAGCATCTGATAAAAGTTTTCTTGGTACAAAACCCCGAAGTTGGCATCGGAATGTTAACACTCTGGTTCCAGCTCCTGGAAATGCGGCTTTATCAAGTACTATTCCTTCCCAAGGGCAGTTACATGGTGGAGATGGAATGCTTGAGAGTACTTTGTACATTCGTAAAGGTAATAGCCTAGTTCGAAAACCATCTCCAGTTGCAGCTCGAGTTTCAGGCTCCCATGATTTAAGCTCAAGCTCATCTGATCAACATGATTGCAGACCTAATATAAAATCTAATGGTAAGGTTGAGGTGGCTAATCCTCCTGTCCATTTTAAAGTAAGGGGAACTGATGTTCCTATTGATAAGCCCTTTCCTCCCCAACTATCTAGTGGGTCTGGGTCGCCCAATCATCCTATTCCCAATGCAGATTATGCACCATCTCCTTGCCATGAACCTGAATCAAATCTCACGAAGTCTAAACATGTTAGTGATCTGTCTAGGTCTGTTGGGGATCCCTCGAAGATTTTTGTAGCTCCTAAAAGCCTGGTTGGTACTGCTGATAAGAAAGAACATCTGACTGAAAAAAAAGACAAGAATTTTGTTTCTTCAGTTGTAAAAAAGATGGTGTATGTAAAGCGCAAGTCAAATCAGTTGGTTGCTACTTCAAAACCCTGTAATTTATCAACTAAAAATATGGAGACTACTTGTTCCTTGGCCTCCGATGGCTATTACAAGAGGAAAAAGAATCAGTTGATCAGGGCATCATCAGAATGTCAGATGAAGCAGACTTCACTCCCCACCGAAGATATTTTGAACCCAGGAGGTCCAAGCTCTTATGGAGATGGAGATGCTAGAAGTTTTGATAAGAGACAACAATATAAAGCTGTAGTGAAAACATATAGGCCGTCAAAGTCCTCTTTGGTATGGACACTTCGCAGTTCTGTTGCTCCAGGAATTGGTGGTGGTAATTTGCAGAATCATAAGATGGCTCCTCGTCTTTTTCCTTGGAAAAGATCACATTGGAAGACCTTCAAGCTAAACGCTTCTACTCAGAGAAACAGCTCTTTCTCTATTGTCAGGCATGTGGAAGCTACGAGGGCAGTTGCTGATGTCGAAAGGAAGAAAAGGGAGCGTAATTTGGATGCATCTATTTCCTCTGATGCTCCGGGTGGAAATCAGTTCTCCTATGACCAAGCATCTGGTTCTACTACTCTGCAACCAAAAAAGAGTGCTAAGAAATTTTTTATTCCACGGAGTCTAATGATTGGAAATGACGAATACGTTAAGATTGGAAATGGCAATCAATTGGTCAGAAATACAAAAAGACGAGCACGCATATTGGCCAATGAGAAAATTCGATGGAGTTTGCACACTGCAAGACAGCGTCTGGCTAAGAAGCGGAAGTACTGTCAATTTTTCACAAGATTTGGCAAATGTAACAAAGAAGGTGGCAAGTGCCCTTATATTCACGACACTTCCAAGATTGCAGTCTGCACAAAATTTCTTAATGGTTTATGCTCTAACGCAAGCTGCAAATTGACTCATAAGGTCATTCCAGAAAGGATGCCTGATTGTTCATACTTTTTACAGGGTTTATGCAGCAGCAAAAATTGTGCTTATAGACATGTAAATGTGAACTCAAAGGCCCCTACTTGCCAGGCTTTTCTCAGGGGTTATTGTGCCCTTGGCAACGAGTGCCGTAAGAAGCACAGTTATGTATGCCCCTTGTTCGAAGCAACAGGTACATGTCCTGATAGACCCAAGTGCAAACTTCACCATCCTAAAAGACAAACCAAAGGAAGAAAAAGGAAACGATCAGAAGGGAAGAATAACGATCAAGGACGGTACTTTGGTTCTAAGAAATACGATGTTTCTGGGTCGAGAATGGTGGTGAGTGAGAAGCATCCTGTTAAGTTGAGTGACCCTTTTCCTGAAAAAGATCTGGCAGATTATATCAGCCTCGACGTTTCTAGTGATGAAGATATTGCAGAAAGCCCCGACTCGACAAGCCTGAGTACGTCCTTTTGCGAAGGTTACCTCTCAGAGTTACTACTAAACAATCCTGACAAGCTAATCAAACCAGTTCGGATAATGACCGAGAATCTGACGATGCAATCGCTGGCAAACTGA 6261 41.06 MDLPPFLYHQRDQSRYISPPPPPPPSSAPLPHPFFPDDPNFHFPSNHHQVLHNIPDKGLDFPLRPPPPPPSYRHPPIHPPPSQAPPLGYNPSQPHFVVSSSIHDDQLRSPHPIREFPRSPPLSSRVSFEGGFHRDFVDLNHSFHETRFDVSDPSRGSADNRPSIPHSPIDFQHGAGHREIDYRSVMPYPPPDMFRYSSGSSSRRGAEYNDRFQTNPREEVLRGRGEENYYHHDQLKADSNITFMESGAMQSPLSRDNKFTSGSFDKHRYGSNYEKESFRSRRNGNVVGKNQRWVHSKQTFRNMHNSYSDGSNDRGYGDRSDFRIMSGKHGHSNPESGKYYGDNKDSIEGYNEYTSTPRKQVQKKSAFLRIQMANPCHSNRESEQLHDSDYFDEKNGFHRGKNQVRSQGYRIDAGKKRQGSPMELDVSFKSNSLVAKAIVTPTQSAPTSHMDKMPGYEKTTNVLVPVPHHNSTDLHLTGKNKDDLGTNDVTNPAPCPPGSKNELKKSEEKATGWLAGNGSNNLTDASLVKGNYSLRKTNVERPSQGMVSGIKGRNAYGKVATVRTMKKKKVVRKVVKKVGSPRLYLQTRNSNVDPLKACSLKNIPPVAENKSSTSGMNSDHGSVLKASQHGMSGSLDNGKADQSVLPLTSEEFQANTDMGMECVPADDSNKNNFDSPLNPLIKEARGSSNQIERNSSFISVPPLLNSNKDLKLSNGPNDFDFECQKSIKPKLCGNEEDLSLENVYSKGSKSIMFSLGSSQSGIVSSNDPNISDNLVNGNSLAVNKDVPMDFDNGGTQVQDNTSLCETCFADGICQQCANRVTGPPETDVVGVSAAKVTISNSLVGVNPEASEMQIDSKNLQDYNSGQHTNQDSDVCRQCTNIRVNEVLNCERIGSAMRESKAMDSSVSLGISSVERSAKAKVSISGGQGEKSLSKMSKIKNCLDFAGSCDINQETNSEDLCVRSNSKNYCPSEQGVSGDGSIIIDVNPTTTEESPMPDFNLLGKSSKNKLSMGFDVNNRGNEIKSRKKRKICIASPVLPCPSVESNEGPALTVISSLNDQLTSNVELMEGEEVAASTVDAFFKASPVSTDCSKGISKMLDEIPKKENSKKINIDDGPFEYCLKYEQPENSRSIREELIVSKCQPLSSLGNEKEDSSSSTMAPHQRNDMDVVICRRKELNIHAEAQSMLCNKTAQWNSPQVPSSQTLNFSYPEAVKASCNLGQDNVHHIERCTDGGSCLTANSDNEIIGIASDTQGDLGSPETSNVQGIDKLHCEVSLRNIDFKMDCEYDKKVKEKSSAENELRASNDTSFPQPTTINQKLGCTNSDNNLTAGKVVPRALVEFKSGLQADNHSANSCKKNQNMVYHKYQTIPGKSFSTCTASKKIASDKSFLGTKPRSWHRNVNTLVPAPGNAALSSTIPSQGQLHGGDGMLESTLYIRKGNSLVRKPSPVAARVSGSHDLSSSSSDQHDCRPNIKSNGKVEVANPPVHFKVRGTDVPIDKPFPPQLSSGSGSPNHPIPNADYAPSPCHEPESNLTKSKHVSDLSRSVGDPSKIFVAPKSLVGTADKKEHLTEKKDKNFVSSVVKKMVYVKRKSNQLVATSKPCNLSTKNMETTCSLASDGYYKRKKNQLIRASSECQMKQTSLPTEDILNPGGPSSYGDGDARSFDKRQQYKAVVKTYRPSKSSLVWTLRSSVAPGIGGGNLQNHKMAPRLFPWKRSHWKTFKLNASTQRNSSFSIVRHVEATRAVADVERKKRERNLDASISSDAPGGNQFSYDQASGSTTLQPKKSAKKFFIPRSLMIGNDEYVKIGNGNQLVRNTKRRARILANEKIRWSLHTARQRLAKKRKYCQFFTRFGKCNKEGGKCPYIHDTSKIAVCTKFLNGLCSNASCKLTHKVIPERMPDCSYFLQGLCSSKNCAYRHVNVNSKAPTCQAFLRGYCALGNECRKKHSYVCPLFEATGTCPDRPKCKLHHPKRQTKGRKRKRSEGKNNDQGRYFGSKKYDVSGSRMVVSEKHPVKLSDPFPEKDLADYISLDVSSDEDIAESPDSTSLSTSFCEGYLSELLLNNPDKLIKPVRIMTENLTMQSLAN 2086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5570415 5580917 + Cp4.1LG02g00180.1 Cpe02g00855 464804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 1762 1781 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 1969 1994 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 471 507 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 1753 1781 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 1296 1320 - -
Cpe02g00855 2086 ProSiteProfiles Zinc finger C3H1-type profile. 1896 1922 IPR000571 GO:0046872
Cpe02g00855 2086 Gene3D - 1923 1985 - -
Cpe02g00855 2086 ProSiteProfiles Zinc finger C3H1-type profile. 1923 1950 IPR000571 GO:0046872
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 60 88 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 147 175 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 606 638 - -
Cpe02g00855 2086 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 1258 2077 - -
Cpe02g00855 2086 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 413 1204 - -
Cpe02g00855 2086 PANTHER CCCH ZINGC FINGER 1258 2077 - -
Cpe02g00855 2086 PANTHER CCCH ZINGC FINGER 413 1204 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 1301 1320 - -
Cpe02g00855 2086 SMART c3hfinal6 1843 1869 IPR000571 GO:0046872
Cpe02g00855 2086 SMART c3hfinal6 1870 1894 IPR000571 GO:0046872
Cpe02g00855 2086 SMART c3hfinal6 1950 1972 IPR000571 GO:0046872
Cpe02g00855 2086 SMART c3hfinal6 1923 1949 IPR000571 GO:0046872
Cpe02g00855 2086 SMART c3hfinal6 1896 1921 IPR000571 GO:0046872
Cpe02g00855 2086 ProSiteProfiles Zinc finger C3H1-type profile. 1841 1870 IPR000571 GO:0046872
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 1 88 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 1643 1662 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 1446 1534 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 16 38 - -
Cpe02g00855 2086 Gene3D - 1868 1922 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 391 422 - -
Cpe02g00855 2086 MobiDBLite consensus disorder prediction 1454 1470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00855 - - - cmax:111480500 3892.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00855 Cpe-Chr2:5570415 Cpe09g00730 Cpe-Chr9:6703501 3.11E-08 dispersed
Cpe02g00855 Cpe-Chr2:5570415 Cpe20g00560 Cpe-Chr20:3311824 1.53E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g208 . . . . . . . . . . Cma01g01036 . Car01g00911 . . . . . . . . . . . . . . . . . . Cone4ag1435 Cone7ag1500 . . . . . . Blo17g00165 . . . . Bpe14g00400 . Bma02g00201 . Cmo01g01075 . . . . . . Cpe02g00855 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003643 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 2 1 2 3 12 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49035 None None None None Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00855 Cpe_Chr02 FPKM 19.388016 20.925497 17.386221 17.516619 10.857048 10.713588 12.02234 17.921612 16.196714 16.282181