Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00858 ATGAATCGCCGGCAGTGCGTGAGAGCCATTTCGGACACAGAGAGTGAGTCCGATCACGAAACGATGAAGTGCTTATCGTGTCTGGAGGATTACCGGTCACGCGACGCCGGAACCTGCAAGGAGTGCTACGATGAAGCCAATGAGACTGAGGAAGAACTCAAGCGTGAGATTGAAGACTTGAAAGCGAAGGTCGCTTTCCTCAGGTTTTGGTCCCCTCTTGATCATCTTCACAGTAGGTCGAATGCACCTTGCTTTACGGATATCGTTTTGATCGCCACCGGCGATGGGCCCGAGGGATACTCTGCGCCTCTTCCGGCTCATAAAGCTGTCTTGGTGAGTCGCTCCCCAGTTTTCAAAGCTATGCTCGAGAACGAAATGGAGGAAAGCCGTAGTGGTACTATAAAGATCAGCGACGTTTCATTCGACGCCCTCCGCGCCTTCGTTAATTATCTATACACAGCAGAAGCCTGTCTTGATGAACAGATGGCTTATGAGCTTCTAGTTTTGGCTGAAAAGTACGAAGTGAAGCATCTGAAGGCTAATTGCGAGAAGTTCCTGATATCAAAACTGAACTGGGACAACTCAATCTTGAACTACACCTTTTCCCATCGGCACAATGGGAAGCATATGATTGATGCAGCGTTAGCAGTGATTATTGAGAACATGAACAAGCTTACCAAAAGGGAGGAGTACATGGAGCTCGTCGAAACGGATCCACGGCTTGTCGTCGAAATCTTTGAAGCTTACATGTCGAAACAGGTAAATACTGCTGCTTCTAAGGATTGTTGTGTGGAGTACAAGTGA 804 48.01 MNRRQCVRAISDTESESDHETMKCLSCLEDYRSRDAGTCKECYDEANETEEELKREIEDLKAKVAFLRFWSPLDHLHSRSNAPCFTDIVLIATGDGPEGYSAPLPAHKAVLVSRSPVFKAMLENEMEESRSGTIKISDVSFDALRAFVNYLYTAEACLDEQMAYELLVLAEKYEVKHLKANCEKFLISKLNWDNSILNYTFSHRHNGKHMIDAALAVIIENMNKLTKREEYMELVETDPRLVVEIFEAYMSKQVNTAASKDCCVEYK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5586937 5592285 - Cp4.1LG02g00150.1 Cpe02g00858 464807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00858 267 PANTHER GH01369P 10 262 - -
Cpe02g00858 267 PANTHER SPECKLE-TYPE POZ PROTEIN 10 262 - -
Cpe02g00858 267 Gene3D - 191 263 - -
Cpe02g00858 267 SMART BTB_4 86 190 IPR000210 GO:0005515
Cpe02g00858 267 Coils Coil 39 63 - -
Cpe02g00858 267 SUPERFAMILY POZ domain 72 188 IPR011333 -
Cpe02g00858 267 Gene3D Potassium Channel Kv1.1; Chain A 71 190 IPR011333 -
Cpe02g00858 267 CDD BTB_POZ_ZBTB_KLHL-like 85 173 - -
Cpe02g00858 267 Pfam BTB/POZ domain 84 189 IPR000210 GO:0005515
Cpe02g00858 267 ProSiteProfiles BTB domain profile. 86 160 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00858 K10523 SPOP; speckle-type POZ protein - csv:101206278 464.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00858 Cpe-Chr2:5586937 Cpe06g00846 Cpe-Chr6:5440584 2.27E-13 dispersed
Cpe02g00858 Cpe-Chr2:5586937 Cpe06g00858 Cpe-Chr6:5575625 1.61E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g203 Blo01g01311 . Bda01g00680 . Bpe02g00625 . . Bma01g02094 . . Cma01g01033 . Car01g00908 . . . . . . . . . . . . . . . . . . . . Cone17ag0814 Cone20ag0419 . . . . . . . . . . . . . Cmo01g01072 . . . . . . Cpe02g00858 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008496 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49036 PF00651 BTB 2.90E-24 CL0033 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00858 Cpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0