Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00859 ATGTCATTTCGTAGTATAGTCCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCGAGGCGTAGTTTTGAGTTCAGACTGCCTGGTCACAATAGAGGTAAATCTCATGGATCAGTCCATGATCTGCTCGATCAACCTCTGGTAATTCAGACTAGTCGATGGGCTAGCCTTCCACCTGAGCTATTGCGGGATGTTGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCTCGCAGGAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGATATGTGCAAAGAGATCGTAAAAACTCCTGAGTTCTCGGGGAAAATTACGTTCCCTGTCTCCTTAAAGCAGCCCGGGACTCGCGATGGAACGATGCAATGCTTCATTAAGAGGGATAAATCTAATTTGACTTACCACCTTTACCTTTGCCTTAGTACTGGCACGGATATGTTTCTAAATAATGATACTCTTGCAGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCGAAAAGAACAAGGAGAGCGACTTGCACCGAGTACGTGATTTCCATGGATGCGGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTAAGGTCGAATTTTCTAGGGACCAAATTTATTATCTATGATACACAGCCTCCATACAACAATGCCCAGATTTCCCCACCAGGCCATAGTCGTAGATTCTACTCGAAAAAAGTTTCTCCGAAGATCCCATCCGGTAGCTATAATATTGCTCAAATCTCCTATGAGCTGAACGTTCTTGGCACTCGAGGCCCCCGAAAGATGCACTGCACAATGCACTCCATCCCCGTCTCATGTCTTGAGCCCGGTGGCACTGTTCCTGGCCAGCCCCAAGTTGTCACTCGACTCCTTGGTGATTCGTTTCGAAGTATATCGTTTTCGAAGTCTGCATTAAATTCTACAGAGTTCAGTAGTTCCCGCTTCTCTGATATCGTTGGTTTACGGGATGAAGATGAAGCGGGGAAGGAGAGGCCATTGATTCTTAGGAATAAGCCACCACGGTGGCACGAGCAGTTGCAGTGTTGGTGCCTTAATTTCAGAGGACGAGTAACCGTTGCCTCTGTCAAAAACTTCCAACTGATCGCTGCAACAGAGCCTTCTTCTTCTACAGCTACAAACCAACACGCTCAATCTTCCCAGTCCGACCACGACAAGATCATTCTTCAATTCGGGAAGGTCGGGAAGGACATGTTTACAATGGATTACCGATATCCATTGTCAGCATTTCAAGCTTTCGCTATCTGTTTGAGTAGCTTTGACACCAAGTTGGCTTGTGAATAA 1317 45.71 MSFRSIVRDVREGFGSLSRRSFEFRLPGHNRGKSHGSVHDLLDQPLVIQTSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWRDMCKEIVKTPEFSGKITFPVSLKQPGTRDGTMQCFIKRDKSNLTYHLYLCLSTGTDMFLNNDTLAALLVDNGKFLLSAKRTRRATCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGHSRRFYSKKVSPKIPSGSYNIAQISYELNVLGTRGPRKMHCTMHSIPVSCLEPGGTVPGQPQVVTRLLGDSFRSISFSKSALNSTEFSSSRFSDIVGLRDEDEAGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSSTATNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5722716 5726459 + Cp4.1LG02g00140.1 Cpe02g00859 464808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00859 438 PRINTS Tubby superfamily signature 416 438 IPR000007 -
Cpe02g00859 438 PRINTS Tubby superfamily signature 340 357 IPR000007 -
Cpe02g00859 438 PRINTS Tubby superfamily signature 358 374 IPR000007 -
Cpe02g00859 438 PRINTS Tubby superfamily signature 395 414 IPR000007 -
Cpe02g00859 438 PRINTS Tubby superfamily signature 246 273 IPR000007 -
Cpe02g00859 438 PRINTS Tubby superfamily signature 181 197 IPR000007 -
Cpe02g00859 438 PRINTS Tubby superfamily signature 197 221 IPR000007 -
Cpe02g00859 438 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Cpe02g00859 438 SUPERFAMILY Tubby C-terminal domain-like 102 438 IPR025659 -
Cpe02g00859 438 ProSitePatterns Tub family signature 1. 358 371 IPR018066 -
Cpe02g00859 438 ProSitePatterns Tub family signature 2. 423 438 IPR018066 -
Cpe02g00859 438 Gene3D Tubby Protein; Chain A 112 432 IPR025659 -
Cpe02g00859 438 PANTHER TUBBY-RELATED 1 438 - -
Cpe02g00859 438 Gene3D - 48 100 - -
Cpe02g00859 438 Pfam F-box domain 53 100 IPR001810 GO:0005515
Cpe02g00859 438 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 438 - -
Cpe02g00859 438 Pfam Tub family 114 433 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00454 Cpe-Chr1:2623952 Cpe02g00859 Cpe-Chr2:5722716 0 dispersed
Cpe02g00859 Cpe-Chr2:5722716 Cpe14g00302 Cpe-Chr14:1776558 0 dispersed
Cpe08g00216 Cpe-Chr8:1432750 Cpe02g00859 Cpe-Chr2:5722716 1.43E-84 dispersed
Cpe17g00641 Cpe-Chr17:5218633 Cpe02g00859 Cpe-Chr2:5722716 4.18E-14 dispersed
Cpe02g00859 Cpe-Chr2:5722716 Cpe01g02118 Cpe-Chr1:17906672 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49037 PF01167 Tub 3.30E-115 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00859 K19600 - csv:101206041 788.104