Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g00859 | ATGTCATTTCGTAGTATAGTCCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCGAGGCGTAGTTTTGAGTTCAGACTGCCTGGTCACAATAGAGGTAAATCTCATGGATCAGTCCATGATCTGCTCGATCAACCTCTGGTAATTCAGACTAGTCGATGGGCTAGCCTTCCACCTGAGCTATTGCGGGATGTTGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCTCGCAGGAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGATATGTGCAAAGAGATCGTAAAAACTCCTGAGTTCTCGGGGAAAATTACGTTCCCTGTCTCCTTAAAGCAGCCCGGGACTCGCGATGGAACGATGCAATGCTTCATTAAGAGGGATAAATCTAATTTGACTTACCACCTTTACCTTTGCCTTAGTACTGGCACGGATATGTTTCTAAATAATGATACTCTTGCAGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCGAAAAGAACAAGGAGAGCGACTTGCACCGAGTACGTGATTTCCATGGATGCGGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTAAGGTCGAATTTTCTAGGGACCAAATTTATTATCTATGATACACAGCCTCCATACAACAATGCCCAGATTTCCCCACCAGGCCATAGTCGTAGATTCTACTCGAAAAAAGTTTCTCCGAAGATCCCATCCGGTAGCTATAATATTGCTCAAATCTCCTATGAGCTGAACGTTCTTGGCACTCGAGGCCCCCGAAAGATGCACTGCACAATGCACTCCATCCCCGTCTCATGTCTTGAGCCCGGTGGCACTGTTCCTGGCCAGCCCCAAGTTGTCACTCGACTCCTTGGTGATTCGTTTCGAAGTATATCGTTTTCGAAGTCTGCATTAAATTCTACAGAGTTCAGTAGTTCCCGCTTCTCTGATATCGTTGGTTTACGGGATGAAGATGAAGCGGGGAAGGAGAGGCCATTGATTCTTAGGAATAAGCCACCACGGTGGCACGAGCAGTTGCAGTGTTGGTGCCTTAATTTCAGAGGACGAGTAACCGTTGCCTCTGTCAAAAACTTCCAACTGATCGCTGCAACAGAGCCTTCTTCTTCTACAGCTACAAACCAACACGCTCAATCTTCCCAGTCCGACCACGACAAGATCATTCTTCAATTCGGGAAGGTCGGGAAGGACATGTTTACAATGGATTACCGATATCCATTGTCAGCATTTCAAGCTTTCGCTATCTGTTTGAGTAGCTTTGACACCAAGTTGGCTTGTGAATAA | 1317 | 45.71 | MSFRSIVRDVREGFGSLSRRSFEFRLPGHNRGKSHGSVHDLLDQPLVIQTSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWRDMCKEIVKTPEFSGKITFPVSLKQPGTRDGTMQCFIKRDKSNLTYHLYLCLSTGTDMFLNNDTLAALLVDNGKFLLSAKRTRRATCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGHSRRFYSKKVSPKIPSGSYNIAQISYELNVLGTRGPRKMHCTMHSIPVSCLEPGGTVPGQPQVVTRLLGDSFRSISFSKSALNSTEFSSSRFSDIVGLRDEDEAGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSSTATNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 438 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5722716 | 5726459 | + | Cp4.1LG02g00140.1 | Cpe02g00859 | 464808 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g00859 | 438 | PRINTS | Tubby superfamily signature | 416 | 438 | IPR000007 | - | |
Cpe02g00859 | 438 | PRINTS | Tubby superfamily signature | 340 | 357 | IPR000007 | - | |
Cpe02g00859 | 438 | PRINTS | Tubby superfamily signature | 358 | 374 | IPR000007 | - | |
Cpe02g00859 | 438 | PRINTS | Tubby superfamily signature | 395 | 414 | IPR000007 | - | |
Cpe02g00859 | 438 | PRINTS | Tubby superfamily signature | 246 | 273 | IPR000007 | - | |
Cpe02g00859 | 438 | PRINTS | Tubby superfamily signature | 181 | 197 | IPR000007 | - | |
Cpe02g00859 | 438 | PRINTS | Tubby superfamily signature | 197 | 221 | IPR000007 | - | |
Cpe02g00859 | 438 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515 | |
Cpe02g00859 | 438 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 438 | IPR025659 | - | |
Cpe02g00859 | 438 | ProSitePatterns | Tub family signature 1. | 358 | 371 | IPR018066 | - | |
Cpe02g00859 | 438 | ProSitePatterns | Tub family signature 2. | 423 | 438 | IPR018066 | - | |
Cpe02g00859 | 438 | Gene3D | Tubby Protein; Chain A | 112 | 432 | IPR025659 | - | |
Cpe02g00859 | 438 | PANTHER | TUBBY-RELATED | 1 | 438 | - | - | |
Cpe02g00859 | 438 | Gene3D | - | 48 | 100 | - | - | |
Cpe02g00859 | 438 | Pfam | F-box domain | 53 | 100 | IPR001810 | GO:0005515 | |
Cpe02g00859 | 438 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 438 | - | - | |
Cpe02g00859 | 438 | Pfam | Tub family | 114 | 433 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00454 | Cpe-Chr1:2623952 | Cpe02g00859 | Cpe-Chr2:5722716 | 0 | dispersed | |
Cpe02g00859 | Cpe-Chr2:5722716 | Cpe14g00302 | Cpe-Chr14:1776558 | 0 | dispersed | |
Cpe08g00216 | Cpe-Chr8:1432750 | Cpe02g00859 | Cpe-Chr2:5722716 | 1.43E-84 | dispersed | |
Cpe17g00641 | Cpe-Chr17:5218633 | Cpe02g00859 | Cpe-Chr2:5722716 | 4.18E-14 | dispersed | |
Cpe02g00859 | Cpe-Chr2:5722716 | Cpe01g02118 | Cpe-Chr1:17906672 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49037 | PF01167 | Tub | 3.30E-115 | CL0395 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g00859 | K19600 | - | csv:101206041 | 788.104 |