Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00868 ATGGTTATTGAAGATGGGGAAAGCAATGGGAATTGCACGGGACGCCCTTTGGAGGTCAAGTTCATGAAGAGCGTGGCAGGAAAAAATGGAATCGGGATGGGGGTTTTGAATGTTGTAACTGAAGGGGTTCCAGGAACTAGCGATGGTTTTCGAACTTACAAGCGGCGGAAGCAGACGAAGTTGGCTTTTGGGAGCGAATGCAAGGGAGATGGCAAGGTTCATGTTGAAGCTGCTAGTCAACTAGTAGTCCAGACTGTTCAAGAAACTTTATACACGCTAAGAGGCAGTAACTCCTGTGATCATGTCCATTCTCCAATGGTCAATTTAGATGAGTGCCCAGAGGACCTCTGGAGATCTGTTTTGTTACAGCAGATATACCAGTCATCAAGTGTCAACGGAGGCAATGTACCAATGTGTGTTCACGATGGCCTTGCTTCTCATTCAGGAGCCAATGACCCCTCAAGATTTAAGATATTTGATGCTCAACATGGAAATAGCAATATTGACCTTCTACGTACTGGATCAGTGTCTAGTAGAGTTCAGATGGCATCTCATAAAGAGAATGGTGTTGTATCAAGTGGATCATTAGAAAATTCGAACAGATGTAGTGTTAGCGAGAGTTGCTGGCGAGCTTTCTTTAGTATTATAGATTCACAGAAGTTTATCTCATTGTGTAAGCTTCTATCTGAAAATTTCAGAGGAATCAAGGCTGATAATGTTTTTGACTTTAGTCTTGTAAACTCAAGGATCAAAGAAGGGGCTTATGAAAACTCACCCATGCTCTTCCTCTCTGACATATGGAGAAAGTTTCAAGCAATTGGTACTGAATTGGTATCACTGGCAGAAAGCCTCTCAGACTTTTCCAGAGCCGCTTATCAAGAAAAGGTGGGAGTTTCAGGACGCAATGTATTTGAAGATGGCAAGCATGAGTTCTCTACGCGGGAATCACCTTCTCATGCTAAAGCAGAGCATATGGATGGTTATGGTGTGTATAAAGTTTGTGCCTGCAGAAGTTGTGGAGAGAAAGCAGAAGGGATTGATTGTCTGGTTTGTGATTCATGCGAGGAAATTTACCATATATCTTGCATCAAACCTCCCGTCAAGGAGATTCCCCTTAAGAGTTGGTTCTGTGCTAGTTGCATTTCAAGTGGATTTAGTTTGTGTCATGAAAACTGTGTAGTATGTGAGAGGTTGAATACGCCCACAATGCTAGCCAATGGAGTTGGTGAAATTCTGGAAACTAGTGAAGTCAATGAGAATCTGAACTGTTGTTTAGATGATGGAATTGAACAACTAAATGACAGCCAAGATTTGGGCCCTTGCAAAATTTGTGGAAATGAAGTAGAAAGTGGTGATAATTTTAGAATATGCAGCCACCTGTTCTGCCCTCACAAATGTTATCACACCAGGTGCTTGACAAAGAAACAGTTAAAATCTTACGATACATGCTGGTACTGCCCTTCTTGTCTTTGCAGAGCATGCCTCATAAATCAAGATGATGACAAGATTGTTTTATGTGATGGCTGCGATCATGGATACCACATTTACTGTATGAGACCACCACTTGCTGAAATTCCAAAAGGAAAATGGTTTTGTAGCAAATGTGAAGCTGGAATCGAGGCAATACGTAGGGTGAAAAGGGCATATGAGAATTTTGAACACAAGCGTAGTAAGAGAGGGAAAGATACATTTGGGGGTTATGGCAATTCAGGCAAGAAACGGATCAATGGAGGCGATCAGGAATCGGATACAGGAAGGAGAGGAATGGACATGCTTCTTACTGCGGCCAAGACCCTAAATTATGAAGAGGGTCTGGCTAACCTTTGA 1827 42.31 MVIEDGESNGNCTGRPLEVKFMKSVAGKNGIGMGVLNVVTEGVPGTSDGFRTYKRRKQTKLAFGSECKGDGKVHVEAASQLVVQTVQETLYTLRGSNSCDHVHSPMVNLDECPEDLWRSVLLQQIYQSSSVNGGNVPMCVHDGLASHSGANDPSRFKIFDAQHGNSNIDLLRTGSVSSRVQMASHKENGVVSSGSLENSNRCSVSESCWRAFFSIIDSQKFISLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSPMLFLSDIWRKFQAIGTELVSLAESLSDFSRAAYQEKVGVSGRNVFEDGKHEFSTRESPSHAKAEHMDGYGVYKVCACRSCGEKAEGIDCLVCDSCEEIYHISCIKPPVKEIPLKSWFCASCISSGFSLCHENCVVCERLNTPTMLANGVGEILETSEVNENLNCCLDDGIEQLNDSQDLGPCKICGNEVESGDNFRICSHLFCPHKCYHTRCLTKKQLKSYDTCWYCPSCLCRACLINQDDDKIVLCDGCDHGYHIYCMRPPLAEIPKGKWFCSKCEAGIEAIRRVKRAYENFEHKRSKRGKDTFGGYGNSGKKRINGGDQESDTGRRGMDMLLTAAKTLNYEEGLANL 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5824985 5834583 + Cp4.1LG02g00120.1 Cpe02g00868 464817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00868 608 SUPERFAMILY FYVE/PHD zinc finger 332 381 IPR011011 -
Cpe02g00868 608 Pfam PHD-finger 336 382 IPR019787 -
Cpe02g00868 608 Pfam PHD-finger 491 536 IPR019787 -
Cpe02g00868 608 SMART PHD_3 440 490 IPR001965 -
Cpe02g00868 608 SMART PHD_3 335 381 IPR001965 -
Cpe02g00868 608 SMART PHD_3 493 536 IPR001965 -
Cpe02g00868 608 ProSiteProfiles Zinc finger PHD-type profile. 488 538 IPR019787 -
Cpe02g00868 608 ProSiteProfiles Zinc finger RING-type profile. 441 489 IPR001841 -
Cpe02g00868 608 Gene3D - 265 383 - -
Cpe02g00868 608 ProSiteProfiles Zinc finger PHD-type profile. 333 383 IPR019787 -
Cpe02g00868 608 PANTHER HISTONE ACETYLTRANSFERASE 138 603 - -
Cpe02g00868 608 SUPERFAMILY FYVE/PHD zinc finger 491 542 IPR011011 -
Cpe02g00868 608 MobiDBLite consensus disorder prediction 560 586 - -
Cpe02g00868 608 PANTHER D4, ISOFORM A 138 603 - -
Cpe02g00868 608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 541 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00868 - - - cmos:111433442 1245.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00868 Cpe-Chr2:5824985 Cpe04g00558 Cpe-Chr4:5986919 8.57E-12 dispersed
Cpe02g00868 Cpe-Chr2:5824985 Cpe06g00859 Cpe-Chr6:5584602 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g202 Blo01g01312 . Bda01g00681 . Bpe02g00624 . . Bma01g02095 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1438 . . Cone20ag0418 . . . . . . . . . . . . . . . . . . . . Cpe02g00868 Bhi09g01871 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007161 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49038 PF00628 PHD 1.20E-12 CL0390 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00868 Cpe_Chr02 FPKM 6.231092 7.344841 3.054586 2.844002 14.400775 15.998623 12.953531 3.041338 3.686928 2.845214