Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00871 ATGATTGCATCACCAATGACTTCTTCACTGGAGATGCCAACATGGTTCTACATCGCCTTCATGATAATGGCTGCCATGGCGGACGATGAAGTCGACCGGTCAGCCATCGCCTTGCCGGGCTGCTCGTATCAATGCGGCGAAGTCGAGATTCCATACCCATTTGGACTCACTCCTGAATGCTCCCTTAATGAGGCATTTCTCGTCACTTGCAACACCTCGATTCTTCCCAACAAGCCGTTCGTCGACAACATTCCAATCATGAGTGTTTCGGTGGAAGATGCCGATTTGGTTATCGAAAATCTTGTGGCTAATTATTGTTTTGATGGCAAAGGAAATATGTCTGGCCACAATGAAACGCTTCTTAAGTTTGACAAGTTCACGATCTCAACGAAGAACATCTTCACCGTCGTTGGTTGTAGTACTGTTTCAATGATCGGAGGCATCCTCCAAGATGATGAGGATTACTTGTCGGGTTGTGCATCGTTTTGTAGTAGCTATCGGAATATGCCGAACGGGACGTGCTCCGGTGTCGGCTTCTTGGTGGAGGAGGGTGAGTTCAGGTTCTCGCCGGCTTATGTTCCACACTTCCCGAACGCCACAGTGCCCATGGTGTTGGAGTGGTCCATCGGCAATGAGTCGTGTGAGGCGGCTGCGGGCAGCCAAGGGTTTGCGTGTCAGGGAAATAGTAGCTGCCTGAACCCTGCCTTCATGGGGGGCTACCGCTGCAACTGCTTGCAGGGATTCACTGGGAATCCTTATTTGCCACATGTTGGGTGCCAAGACATAAATGAATGTGATGATCCAAATGAAAACGAGTGTACGGATATATGTATAAATACGGTAGGAGGTTATCGATGTGAATGCCCAAATGGATACTCCGGCAGTGGCAGAAAGGATAGCAATGGCTGTGTTCCCCGCCGCCGGTTCCATACTCTCATATTACTTTCTGGTATCGGGCTGGCAGTAATGGGCGTGCTAGTAAGTTCGTCCTGGTTCTACATCGGCTTCAAGAGATGGAAGCTCATCAAACTCAAAGCTAATTTCTTCGAACGAAACGGCGGATTAATGTTAGAGCAACAGCTTTCCATCCGCGATGAAGCCAACCAAACTGCAAAGATCTTCACCGCAGAGGAATTACGGAAAGCCACTAACAACTACTCCGACGACCGAATCGTCGGCAAAGGTGGCTTCGGAACCGTCTACAAAGGCATCCTCCCTACCGGCGCCGCCGTCGCCATCAAGAAATCCAAGGTTGTCGACAACGCTCAAAACAAGCAGTTCATCAACGAAGTCATCGTCCTCTCGCAGATCAATCACCGCAACACAAATCGGCTGAGAGAAATGTTAGACAAAAATTTGGGCGGCGATGTGGAGTACGAGCAACTGAAGGAAGTCGCGAGCCTTGCGAAGAGGTGTTTGAAAGTGAAAGGGGAAGAAAGGCCGACAATGAAGGAGGTGGCTGCAGAGCTTGAAGGGTTGTTTCATATGGCGTTTGGTCATCCATGGATGGTTGATGATAAATCTCCATTAGTTGAAGAATCAGAGGTTTTGTCGAGTGGAGAAAAGGAGAATCAGAAGGACGATGGTGTTGATTCTGTTGGTCGCGAGGTTGCATCTGGAACTGAGTGTAGGGAAGGGAGTAACCGATATGATAGCTTTCCCACTAACCAAATCATACCAAAAGCAGATTCTGGGAGATAA 1701 48.85 MIASPMTSSLEMPTWFYIAFMIMAAMADDEVDRSAIALPGCSYQCGEVEIPYPFGLTPECSLNEAFLVTCNTSILPNKPFVDNIPIMSVSVEDADLVIENLVANYCFDGKGNMSGHNETLLKFDKFTISTKNIFTVVGCSTVSMIGGILQDDEDYLSGCASFCSSYRNMPNGTCSGVGFLVEEGEFRFSPAYVPHFPNATVPMVLEWSIGNESCEAAAGSQGFACQGNSSCLNPAFMGGYRCNCLQGFTGNPYLPHVGCQDINECDDPNENECTDICINTVGGYRCECPNGYSGSGRKDSNGCVPRRRFHTLILLSGIGLAVMGVLVSSSWFYIGFKRWKLIKLKANFFERNGGLMLEQQLSIRDEANQTAKIFTAEELRKATNNYSDDRIVGKGGFGTVYKGILPTGAAVAIKKSKVVDNAQNKQFINEVIVLSQINHRNTNRLREMLDKNLGGDVEYEQLKEVASLAKRCLKVKGEERPTMKEVAAELEGLFHMAFGHPWMVDDKSPLVEESEVLSSGEKENQKDDGVDSVGREVASGTECREGSNRYDSFPTNQIIPKADSGR 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5850147 5854121 - Cp4.1LG02g00020.1 Cpe02g00871 464820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00871 566 MobiDBLite consensus disorder prediction 513 533 - -
Cpe02g00871 566 Gene3D Phosphorylase Kinase; domain 1 358 452 - -
Cpe02g00871 566 CDD EGF_CA 261 294 - -
Cpe02g00871 566 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 443 509 - -
Cpe02g00871 566 MobiDBLite consensus disorder prediction 545 566 - -
Cpe02g00871 566 SMART egfca_6 214 260 IPR001881 GO:0005509
Cpe02g00871 566 SMART egfca_6 261 304 IPR001881 GO:0005509
Cpe02g00871 566 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 200 444 IPR045274 GO:0007166
Cpe02g00871 566 SUPERFAMILY Protein kinase-like (PK-like) 371 449 IPR011009 -
Cpe02g00871 566 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 178 IPR045274 GO:0007166
Cpe02g00871 566 Pfam Wall-associated receptor kinase galacturonan-binding 41 76 IPR025287 GO:0030247
Cpe02g00871 566 ProSitePatterns Calcium-binding EGF-like domain signature. 261 286 IPR018097 GO:0005509
Cpe02g00871 566 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 443 509 IPR045274 GO:0007166
Cpe02g00871 566 ProSitePatterns Protein kinases ATP-binding region signature. 392 415 IPR017441 GO:0005524
Cpe02g00871 566 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 30 178 - -
Cpe02g00871 566 Pfam Protein kinase domain 386 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00871 566 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 200 444 - -
Cpe02g00871 566 MobiDBLite consensus disorder prediction 513 566 - -
Cpe02g00871 566 SMART egf_5 264 304 IPR000742 -
Cpe02g00871 566 SMART egf_5 213 260 IPR000742 -
Cpe02g00871 566 Gene3D Laminin 212 263 - -
Cpe02g00871 566 CDD EGF_CA 225 250 - -
Cpe02g00871 566 Gene3D Laminin 264 305 - -
Cpe02g00871 566 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 277 288 IPR000152 -
Cpe02g00871 566 Pfam Calcium-binding EGF domain 261 298 IPR001881 GO:0005509
Cpe02g00871 566 ProSiteProfiles Protein kinase domain profile. 386 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00871 566 SUPERFAMILY Growth factor receptor domain 151 304 IPR009030 -
Cpe02g00871 566 ProSiteProfiles EGF-like domain profile. 261 295 IPR000742 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00871 - - - cmo:103490390 646.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00871 Cpe-Chr2:5850147 Cpe13g01098 Cpe-Chr13:8857398 4.31E-24 dispersed
Cpe02g00871 Cpe-Chr2:5850147 Cpe13g00648 Cpe-Chr13:6169828 3.72E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g194 . . . . . . . . Cmo04g02520 . Cma01g01027 . . . . . . Bhi04g01849 . . . . . Lcy10g1283 Cla08g00643 . . . . . . . Cone7ag1496 . . . . . Cme03g00456 Blo17g00161 . . . . Bpe14g00403 . Bma02g00195 . . . . . . . . Cpe02g00871 . . . . . . . . . . . . . . Lsi08g00497 . Chy03g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000104 3 8 3 4 2 5 1 5 5 8 7 5 10 11 3 9 5 3 5 6 7 5 5 3 4 16 0 1 1 10 160
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62222 PF00069 Pkinase 1.50E-08 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00871 Cpe_Chr02 FPKM 0.405046 0.0 0.734639 1.154527 5.676282 7.454095 6.753392 2.347083 2.324106 2.344268