Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00872 GGAAGTAGAAAAGTAAAGGACACCAAAAAAATTCATTCCCACCGCCCCGAGTTCAACCTCTCTGCTTCGATTCTTCTTCCCATAAATAAACCCATCGCTATCCATTTTGTTGGTTTCAATTTGTTCTCCCAGTTTGACCGGTTGCGGATTTGTATGAGTGGATCCCAATTGTGGCGCAAGAAAGTTTCGAAATCTCCTGTTGGTTTAGCGAAGAGAAGAATGGCCAATACTGCAGCAGCCTGTGCAGAGAGGGCAACCAGTGATATGCTGATTGGTCCAGACTGGGCCATAAACATTGAGCTATGTGATATTATTAACATGGACCCTGGGCAAGCAAAGGAGGCCTTGAAGATACTCAAGAAGCGGCTTACAAACAAAAACCCCAAGATTCAGATTTTGGCTCTTTTTGCCTTGGAGACTCTTAGCAAAAATTGTGGTGAGAATGTGTTTCAGCAGATTATTGAGCGTGACATCCTGCATGACATGGTTAAAATAGTGAAGAAGAAGCCGAGCTTGGATGTGAAGGAGAAAATATTAGTTCTAATAGATACATGGCAAGAAGCATTTGGGGGACCAAGGGGAAGGTATCCCCAGTGCTATGCTGCTTATAATGAATTAAAGAATGCTGGAGTTGATTTTCCACCACGAGAAGAGAATAGTGTTCCATTTTTTACTCCACCTCAGACCCAGCCCATTGTTAATCAACCTGCTGCAAGCTATGAGGATGCTGTACTTCATGCCTCTCTCGATTCTGATGTTTCTGGCCTGAGCTTGCCAGAGATTCGAAATGCACAGGGTCTTTCAGATGTGCTATTGGAGATGCTTGGTGCTTTGGACCCTAAAAAACCAGAGGGCGTGAAGCAAGAACTGATTGTTGACCTGGTTGACCAGTGCCGGTCTTATCAAAAGCGTGTCATGCTGCTTGTAAATAGTACAGCAGATGAAGAACTTTTATGTCAGGGATTGGCTTTGAATGATAGTCTGCAGCGAGTACTTGAACAACATGATAATATTGCGAATGGAACTACTACTAGGAACGCAACAGGAGCTGAATCATCATCTCTTCCGATTATAAATGTCAGCCATGACGATGACGAATCAGAAGATGATTTTTCACAGTTAGCTCGAAGAAAACCAGCCAGCAGTAATACAGAAGGAACTCGTGTTGGCCCTCTTCTACCTCCTCCACCATCATCAAAGAGGCCTGTTGTTACAGGAGGCAGCGGCGTGGTTGATTACCTCAGTGGTGATGCTTACAAATCAGAAGAAACATCAGAAACCTCTCGTCCACCGTTCACTGTTTCAACTTCAACCCCGCCGTCTTCTTCTCCCCTTCCCCATGTTGAACGCTCTATCCCATCACAGCCACTTCCCACTGGACAACCTGTGTATGATGAACCAGCTCCCACGAGCAGGTCTGCTGATCCGCTGCCTCCAGCACAATGGGGATCACAGTCCCAAAGCTCCTCCTTTCTTCCACCACCACCATCAAAATATGATCAGAGACAACAATTTTTCGACCAACAAGAAACTCATGGGTCAGGTTCGTACGATAGTTTAGTCGGACATGCACAGAGCCTCTCTCTCAACTCACCAACCCCAACTAAGCAGGAAAAGCAAGAGGATGTACTATTTAAAGATCTGGTTGATTATGCCAAAGCTAGGTCGTCGTCTTCGTCAAAGCCGAACCGATCTTTGTGA 1701 45.33 GSRKVKDTKKIHSHRPEFNLSASILLPINKPIAIHFVGFNLFSQFDRLRICMSGSQLWRKKVSKSPVGLAKRRMANTAAACAERATSDMLIGPDWAINIELCDIINMDPGQAKEALKILKKRLTNKNPKIQILALFALETLSKNCGENVFQQIIERDILHDMVKIVKKKPSLDVKEKILVLIDTWQEAFGGPRGRYPQCYAAYNELKNAGVDFPPREENSVPFFTPPQTQPIVNQPAASYEDAVLHASLDSDVSGLSLPEIRNAQGLSDVLLEMLGALDPKKPEGVKQELIVDLVDQCRSYQKRVMLLVNSTADEELLCQGLALNDSLQRVLEQHDNIANGTTTRNATGAESSSLPIINVSHDDDESEDDFSQLARRKPASSNTEGTRVGPLLPPPPSSKRPVVTGGSGVVDYLSGDAYKSEETSETSRPPFTVSTSTPPSSSPLPHVERSIPSQPLPTGQPVYDEPAPTSRSADPLPPAQWGSQSQSSSFLPPPPSKYDQRQQFFDQQETHGSGSYDSLVGHAQSLSLNSPTPTKQEKQEDVLFKDLVDYAKARSSSSSKPNRSL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5861472 5872071 - Cp4.1LG02g00010.1 Cpe02g00872 464821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00872 566 Pfam GAT domain 269 340 IPR004152 GO:0035091|GO:0043130
Cpe02g00872 566 Pfam VHS domain 82 209 IPR002014 GO:0035091|GO:0043130
Cpe02g00872 566 ProSiteProfiles VHS domain profile. 85 214 IPR002014 GO:0035091|GO:0043130
Cpe02g00872 566 CDD VHS 83 208 - -
Cpe02g00872 566 MobiDBLite consensus disorder prediction 360 542 - -
Cpe02g00872 566 SMART VHS_2 78 210 IPR002014 GO:0035091|GO:0043130
Cpe02g00872 566 MobiDBLite consensus disorder prediction 425 458 - -
Cpe02g00872 566 Gene3D - 69 231 IPR008942 -
Cpe02g00872 566 CDD GAT_GGA_like_plant 260 338 - -
Cpe02g00872 566 SUPERFAMILY GAT-like domain 218 341 - -
Cpe02g00872 566 MobiDBLite consensus disorder prediction 477 538 - -
Cpe02g00872 566 Gene3D - 256 348 IPR038425 -
Cpe02g00872 566 ProSiteProfiles GAT domain profile. 252 340 IPR004152 GO:0035091|GO:0043130
Cpe02g00872 566 SUPERFAMILY ENTH/VHS domain 81 215 IPR008942 -
Cpe02g00872 566 PANTHER TOM1-LIKE PROTEIN 74 565 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cpe02g00872 566 PIRSF TOM1 69 566 IPR014645 -
Cpe02g00872 566 PANTHER TOM1-LIKE PROTEIN 4 74 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00872 - - - bhj:120086046 778.089
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02087 Cpe02g00872 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02087 Cpe-Chr1:17686384 Cpe02g00872 Cpe-Chr2:5861472 6.46E-120 dispersed
Cpe02g00872 Cpe-Chr2:5861472 Cpe13g00651 Cpe-Chr13:6181538 1.89E-150 dispersed
Cpe02g00872 Cpe-Chr2:5861472 Cpe06g00862 Cpe-Chr6:5614640 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00872 Cpe_Chr02 FPKM 0.23125 1.008233 1.148743 1.539948 2.628243 3.708777 3.112223 2.618417 2.421832 2.156705