Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00876 ATGGCCGGGTTTAGAACGTTGTTCGTCTTCTCGTTGTTGTACTTTGTCGCGGCATGTACCGATGCCAATGTCGATGACCATGATGAATATTGGCTCACTCGTGCTAATGAGGCTAAGAAAGTAGCCCAAGATGCCTACAATCCTAACCCAGAAAGCGTCACTGAGCATTTGAACGTCGCCGTCCATCTGGCAATAGTGGGTGACAATAGTACAAGAAGGAGTCTCAATAAATATAAAGGACCATGTTTGAAGACAAACCCGATCGATAGATGCTGGAGATGCGATAAAAATTGGGCTAAGAATCGAAAGAAGCTAGCTGAGTGCCCGTTAGGGTTCGGCCACCAAACCATCGGCGGAAAGAGAGGACGCATCTACGTGGTGACCGACGCATCTGATGATAACTTGGTTGACCCGAAGCCAGGAACCCTCCGCTATGGCGTGATTCAAAAAGGTCCACTTTGGATCATTTTTGGACGTAGCATGGTCATCCGGCTAGCACAAGAGCTGATGATCTCAAGCGACAAGACCATCGATGCTCGTGGCTTTAATGTACACATTGCCTATGGCGCTGGCCTCACCATTCAATTCGCCCACAATGTTATCATCCATGGCCTTCACATCCATAATATCATCTCCAAATCCGGTGGCTATATTAGAGATTCCGTTGATCATTATGGATTTAGAACACAAAGCGATGGCGATGGTATCTCCATCTTCGGCTCTTCTCATGTATGGATCGACCATGTTTCCATGTATGCATGCCAAGACGGCCTCATCGATGCCATCATGGGTTCCACTGGCATCACCATTTCCAATAGTCATTTCACTCATCACAACGAGGCTATGTTATTCGGAGCAAGCGATAGCTACAAAGAGGACGAGATCATGCAAATAACGCTCGCATTCAACCACTTCGGGAGGGGATTAGTGCAAAGAATGCCAAGGTGTAGATTTGGGTTCTTCCATGTGGTGAACAATGACTACACCCATTGGCTAATGTATGCCATCGGAGGTAGCCAGCATCCAACCATCGTGAGCCAAGGCAACCGATTCATTGCGCCACAGAACATCAATGCAAAAACGATAACAAAGAGAGAGTATGCAGATGAGAGTGAGTGGAAGAAGTGGTCGTGGAGATCGGAAGGGGATTTGTTTCTGAATGGTGCGGTGTTTGTTGGGTCGGGAGACCAAACCAAAGGGAAGAAGAAGGACTTGACGAGGTATGACATGATTTCGTTCAAGCCAGGGTCTTATGTGAAGAGACTTGTACGCTTCGCGGGAACACTTGAATGTCGTGTAGGCAAACCATGCTAG 1314 47.41 MAGFRTLFVFSLLYFVAACTDANVDDHDEYWLTRANEAKKVAQDAYNPNPESVTEHLNVAVHLAIVGDNSTRRSLNKYKGPCLKTNPIDRCWRCDKNWAKNRKKLAECPLGFGHQTIGGKRGRIYVVTDASDDNLVDPKPGTLRYGVIQKGPLWIIFGRSMVIRLAQELMISSDKTIDARGFNVHIAYGAGLTIQFAHNVIIHGLHIHNIISKSGGYIRDSVDHYGFRTQSDGDGISIFGSSHVWIDHVSMYACQDGLIDAIMGSTGITISNSHFTHHNEAMLFGASDSYKEDEIMQITLAFNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPQNINAKTITKREYADESEWKKWSWRSEGDLFLNGAVFVGSGDQTKGKKKDLTRYDMISFKPGSYVKRLVRFAGTLECRVGKPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6145392 6147313 + Cp4.1LG02g09060.1 Cpe02g00876 464825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00876 437 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Cpe02g00876 437 Pfam Pectate lyase 192 351 IPR002022 -
Cpe02g00876 437 Pfam Pectate lyase, N terminus 23 75 IPR007524 GO:0030570
Cpe02g00876 437 PANTHER PECTATE LYASE 6 437 - -
Cpe02g00876 437 PANTHER PECTATE LYASE 18-RELATED 6 437 IPR045032 GO:0030570
Cpe02g00876 437 SUPERFAMILY Pectin lyase-like 76 431 IPR011050 -
Cpe02g00876 437 Gene3D - 85 430 IPR012334 -
Cpe02g00876 437 PRINTS Pollen allergen Amb family signature 108 125 IPR018082 -
Cpe02g00876 437 PRINTS Pollen allergen Amb family signature 132 157 IPR018082 -
Cpe02g00876 437 PRINTS Pollen allergen Amb family signature 168 184 IPR018082 -
Cpe02g00876 437 PRINTS Pollen allergen Amb family signature 232 253 IPR018082 -
Cpe02g00876 437 PRINTS Pollen allergen Amb family signature 312 331 IPR018082 -
Cpe02g00876 437 PRINTS Pollen allergen Amb family signature 334 353 IPR018082 -
Cpe02g00876 437 PRINTS Pollen allergen Amb family signature 376 400 IPR018082 -
Cpe02g00876 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Cpe02g00876 437 SMART amb_all 160 357 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00876 Cpe-Chr2:6145392 Cpe07g00605 Cpe-Chr7:4119676 0 dispersed
Cpe02g00876 Cpe-Chr2:6145392 Cpe01g01447 Cpe-Chr1:8663789 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00876 K01728 - csv:101217922 742.265