Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00877 TACAAGTTTCTGAATCCTATCGATGATGTTATTTCGCGCAAGTGCACCTCCTTTCGAACCCTCTTCAACGCATCTGCAAATAGAATTCGAGAATCCGATCACGATAATTTAATGAGGAGAGTGAAAAGGTTGCAGCAGGAGGCATCCATGATTCCCGGGGGGGTTTCTTATGGAAGTGGTGACTGGCAAGGATCTATGAGGGTTCCTTATCAACACCCACAATATCATGATAGTAGTCGATATCAATCTTCGGTTCGTGGCAGCTTTCCATTGACAATGGGAAGCTTGCAACAGAGGGATCGTTGGATTGGACTTGGCGACTATGATAACAGGGAGAGGGGCAATGATATGACAAGCGATGAAGATGAGGAGGGGATCTATGTTCATAATGATGCTCGTAACGAGAAGAATGGATCGCAATGGCAGCGTGTGAAGTGGACGAACAAGATGGTGAAGCTCTTGATTACTGTTTTATCCTATATGGGAGAGGATTCTGGTTCTGGATGTGGAAGCTTAGGGACAAGGAGACTTGTAGTGTTACAAAAGAAGGGGAAGTGGAAATCGGTTTCGAAGATAATGGGCGAGCGAGGTTATCATGTTTCGCCCCAGTATAAGAGACTGAATGATATGCTCGGTAGGGGGACGTCCTGCAAAGTTGTCGAGAACCCTGCGGTTTTGGACGAGATAGATTATTTGAAAGCAAAGGAAAAGGATGATGTTAGGAAGATTCTAAACTCCAAGCATTTGTTCTATGAGGAGATGTGTTCTTATCATAATGGTAATAGACTGCATTTGCCTCATGAACCAGAATTGCTTCATTCTTTACAGTTGCTACGGATCGAGTCGCATTGTATTGAGTTAGAAGAGAAACGGGTTCGAATCGAAATAGGGAGATTGGAATTGGAGAACGAACGTATGAAGTGGGAGCGATTTAAGAAGAAACGAGAGCGGGAATTGGAAAATTTGAAGTTGGAAAATGAGAGGATGAGGCTTGAGAATGAACTCATAGCATCACAACTGAAGAAAAGGAGATGCTCTCATCTTCACAGGATT 1053 43.59 YKFLNPIDDVISRKCTSFRTLFNASANRIRESDHDNLMRRVKRLQQEASMIPGGVSYGSGDWQGSMRVPYQHPQYHDSSRYQSSVRGSFPLTMGSLQQRDRWIGLGDYDNRERGNDMTSDEDEEGIYVHNDARNEKNGSQWQRVKWTNKMVKLLITVLSYMGEDSGSGCGSLGTRRLVVLQKKGKWKSVSKIMGERGYHVSPQYKRLNDMLGRGTSCKVVENPAVLDEIDYLKAKEKDDVRKILNSKHLFYEEMCSYHNGNRLHLPHEPELLHSLQLLRIESHCIELEEKRVRIEIGRLELENERMKWERFKKKRERELENLKLENERMRLENELIASQLKKRRCSHLHRI 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6164890 6167328 + Cp4.1LG02g09070.1 Cpe02g00877 464826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00877 351 Gene3D - 146 206 - -
Cpe02g00877 351 PANTHER F16F4.11 PROTEIN-RELATED 47 277 - -
Cpe02g00877 351 Coils Coil 27 47 - -
Cpe02g00877 351 PANTHER F16F4.11 PROTEIN 280 344 - -
Cpe02g00877 351 PANTHER F16F4.11 PROTEIN 47 277 - -
Cpe02g00877 351 PANTHER F16F4.11 PROTEIN-RELATED 280 344 - -
Cpe02g00877 351 Coils Coil 312 341 - -
Cpe02g00877 351 Pfam Myb/SANT-like DNA-binding domain 143 203 IPR044822 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00877 - - - cmax:111480603 475.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02116 Cpe-Chr1:17894154 Cpe02g00877 Cpe-Chr2:6164890 4.41E-11 dispersed
Cpe02g00877 Cpe-Chr2:6164890 Cpe03g00225 Cpe-Chr3:1123388 3.54E-09 dispersed
Cpe02g00877 Cpe-Chr2:6164890 Cpe13g00682 Cpe-Chr13:6381999 1.41E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g136 . . . . . Bpe04g00016 Bma04g00023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car09g00061 . Cpe02g00877 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003875 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 3 1 3 1 1 2 2 0 2 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00877 Cpe_Chr02 FPKM 17.474461 21.960144 13.671411 13.886014 18.365915 21.598614 20.507797 15.255036 14.350785 15.404458