Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00883 ATGGATAAGCCTACTGCACGGGATGATGACAGCGCCCCAGCGGCAGCTCAGGGTGGTGGGAAGTCGAAGAAAAAGACATTTGCAGTAGACGATGATGAGTACTCCATCGGAACCGAGTTGTCTGAAGAAGCCCCAGTTCAGGAGGAGAATGTCGTGATAACTGGGAAAAAGAAGGGTAAGAAGGGAAATTCAAAAGTTTCACAAGTTAAAGGGGATGATGATGAGGATGATGATGTGGATAGTGTTTCAGAAATTGTTATCACCGGGAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCCTTTTCTGCTTCCAGCTTTGGTTTACTTGAGGAGGAGGGAGAGGATGGTGCTGATAATGATGATGAATCTGTGTTAACTGCAGAAAAGGATGACGATGAAGGGGATGATTCTGAAATCAAGTTTTCAGGTAAGAAGTCGTCGGCGAAGTCTTCCAAGAAGAGTGGTAAGAAAAAGTCATCAAAAGGTGCCAAAAAGGGTGTGAATGCATTTTCAGGTTTTAGTGGTCTTGACTATCAGGATGAGGACAGAGATGCTGGTAAGGTTGAGGATGAAGATGTTACAACGATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGCTAAGGGTTCAAAGAAAAGTGGCAATTCGGTTAGTGTAGCATTTGCTGATGAGGATAATGATGGCGATGTTTCTATTTCAGAGCCAGATAAATTACAAAATGATGGTGTTGATGAAGATGATGACAATGTTATTGCGTTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTCCTTTTATCACATTAAGTGATGAAAATCTGCCGGGCAATGATGTTAAAGATGTATTCGTACCTGAAGTACTTAATTCAGCAAGTAGCAGTTTTGCTTCCGATCTATCTAAAGCTAACAAGACGGAGGGGGTAGCAGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGTGGAAGGACTGCCCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGCCTACTATATCAAAACCAGCCGACCCTCCTCTCTCTTCACAAGAGGCCAAAGTTGAGAACCCACCTGACCTTGTAACTCCTCCTGATGCATCAGCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAAACGGCTGCAGCTAGGAAGAAGAAAAAGAAAAAGGAGAAGGAAAAGGAGAAAAAGGCTGCAGCTGCAGCGGCAGCAGCTGCTGAAGGGAAGGATGAGAAAATTGAGGAGGTAAAGACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCAGATAAGAAAGTGCCGAAGCATGTTAGGGAGATGCAAGAGGCTATGGCTAGGAGGAAAGAAGAAGAAGAGAGAAGGAAAAGGGAAGAGGAAGAGAAATTGAGGAAGGAGGAAGAAGAGAGACGGAGGCAAGAAGAACTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTCCTAAAGAAGAAACAAGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCAAGTTCAGGGGGTTTGCCACTGTCTGCATCTGACCCTAGTGCACCAACCAAACGACCAAAATACCAGACAAAGAAGTCAAAACCTGCCCATCATCAAACAAATGGTAGTGCGCAAACTAAGGTGATGGAACATACAGAAGAAAAGATACAAGAAAAAGATGTGGCAGATTCTGAAATATTGGAGTCTGAGAAGATTGAACCTGTTGAGTCGATTCACGTGGAGGAAAAATCGGATATTCTTGAGGTTTCTGAAGATAATGAACTTAAAAAAGAGGACGAGGATGAGGATGAGGATGAGTGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTTGCTGATGAGGAGCTTGATTCAGAGACTGAGAATGGCATGAAAAAGGATGGAAAGAATGGTGCACAAACTTCACGTGATGCAGGTGCCAAGCCAATTGCCCCTGCCCAAAAAAGTTTACCTTCTCAGCCTATAAGGTCTCAAGATATTGAAAACAGAAAGAATCAGCCTGAGGTTGAGGTTGTTGACAAGGGCAAACGAAAAGATGATGCTGTTAGGAAAAAAATTTCAACATCAGATACTACTACTAAACAACAGGAAGAAAATCTTCGCTCACCCATTTGTTGTATTATGGGCCACGTTGACACTGGTAAAACCAAACTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCAGGAGGAATTACGCAGCAGATTGGGGCAACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGATGGTTCCTGGCTTGCTTGTTATTGATACCCCTGGGCACGAATCATTTACAAATTTGCGTTCTCGTGGTTCGGGTGCCAAGCCAATTGCCCCTGCCCAAAAAAGTTTACCTTCTCAGCCTATAAGGTCTCAAGATATTGAAAACAGAAAGAATCAGCCTGAGGTTGAGGTTGTTGACAAGGGCAAACGAAAAGATGATGCTGTTAGGAAAAAAATTTCAACATCAGATACTACTACTAAACAACAGGAAGAAAATCTTCGCTCACCCATTTGTTGTATTATGGGCCACGTTGACACTGGTAAAACCAAACTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCAGGAGGAATTACGCAGCAGATTGGGGCAACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGATGGTTCCTGGCTTGCTTGTTATTGATACCCCTGGGCACGAATCATTTACAAATTTGCGTTCTCGTGGTTCGGGTTTATGTGACCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTAAATCTCTTGAGGATGAGAAACACAGAATTTATTATTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATACTGAAGACAATGAAGCAGCAATCCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATCACTCAATTTAAAGAGCAGGGATTGAATACCGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACTTGTTATTATTATTGGTTCAGTGGGCGCAGAAAACCATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGTACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAACGGTGTACTGCATGAAGGAGATCAAATAGTTGGCCCAATTGTTACCACTATTCGAGCCCTATTGACCCCGCATCCAATGAAGGAGCTCCGAGTGAAGGGAACGTATCTGCATCATAAAGAAATCAAGGCTGCTCAGGGAATTAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCTATGGAAGATATGAAGTCAGTTGGCACACCAATCTGTATTCCTCAACGAGAATTTATTGAGATTGGTCGCATCGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAGGGGCAGAAGATTGCCATTAAGATTGTTGGGCACTCTTCGGAGGAGCAGCAAAAGATGTATGGTAGGCATTTTGATTTGGAGGATGAACTTGTCAGTCATATATCAAGGAAGTCCATTGACCTACTCAAAGCCAATTATCGGGATGATTTGTCCACGGAGGAGTGGAGACTGGTGGTGAAATTGAAGAACCTTTTCAAGATACAATGA 3978 42.43 MDKPTARDDDSAPAAAQGGGKSKKKTFAVDDDEYSIGTELSEEAPVQEENVVITGKKKGKKGNSKVSQVKGDDDEDDDVDSVSEIVITGKKKGKSKKGGSSSAFSASSFGLLEEEGEDGADNDDESVLTAEKDDDEGDDSEIKFSGKKSSAKSSKKSGKKKSSKGAKKGVNAFSGFSGLDYQDEDRDAGKVEDEDVTTISFSGKKKKSAKGSKKSGNSVSVAFADEDNDGDVSISEPDKLQNDGVDEDDDNVIAFSGKKKSSKKKSSSPFITLSDENLPGNDVKDVFVPEVLNSASSSFASDLSKANKTEGVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPTISKPADPPLSSQEAKVENPPDLVTPPDASAEKEAEEESTETAAARKKKKKKEKEKEKKAAAAAAAAAEGKDEKIEEVKTEIIEPKKGAAKSKVPDKKVPKHVREMQEAMARRKEEEERRKREEEEKLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILASSGGLPLSASDPSAPTKRPKYQTKKSKPAHHQTNGSAQTKVMEHTEEKIQEKDVADSEILESEKIEPVESIHVEEKSDILEVSEDNELKKEDEDEDEDEWDAKSWDDAVVDLSLKSSFADEELDSETENGMKKDGKNGAQTSRDAGAKPIAPAQKSLPSQPIRSQDIENRKNQPEVEVVDKGKRKDDAVRKKISTSDTTTKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLMVPGLLVIDTPGHESFTNLRSRGSGAKPIAPAQKSLPSQPIRSQDIENRKNQPEVEVVDKGKRKDDAVRKKISTSDTTTKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLMVPGLLVIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDLLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVGTPICIPQREFIEIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTEEWRLVVKLKNLFKIQ 1325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6270842 6288269 + Cp4.1LG02g08980.1 Cpe02g00883 464832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 653 675 - -
Cpe02g00883 1325 PANTHER PHOTOSYSTEM II PROTEIN D1 833 1225 - -
Cpe02g00883 1325 PANTHER PHOTOSYSTEM II PROTEIN D1 1225 1325 - -
Cpe02g00883 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 883 1177 IPR027417 -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 375 394 - -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 180 201 - -
Cpe02g00883 1325 TIGRFAM small_GTP: small GTP-binding protein domain 896 1021 IPR005225 GO:0005525
Cpe02g00883 1325 SUPERFAMILY Translation proteins 1225 1324 IPR009000 -
Cpe02g00883 1325 PRINTS GTP-binding elongation factor signature 895 908 IPR000795 GO:0003924|GO:0005525
Cpe02g00883 1325 PRINTS GTP-binding elongation factor signature 1011 1020 IPR000795 GO:0003924|GO:0005525
Cpe02g00883 1325 PRINTS GTP-binding elongation factor signature 975 986 IPR000795 GO:0003924|GO:0005525
Cpe02g00883 1325 PRINTS GTP-binding elongation factor signature 959 969 IPR000795 GO:0003924|GO:0005525
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 415 529 - -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 704 734 - -
Cpe02g00883 1325 Gene3D - 736 833 IPR027417 -
Cpe02g00883 1325 Gene3D - 884 1113 IPR027417 -
Cpe02g00883 1325 Coils Coil 445 512 - -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 623 640 - -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 325 340 - -
Cpe02g00883 1325 Gene3D Translation factors 1222 1325 - -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 1 283 - -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 825 888 - -
Cpe02g00883 1325 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 833 1225 IPR015760 -
Cpe02g00883 1325 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1225 1325 IPR015760 -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 114 138 - -
Cpe02g00883 1325 Pfam Elongation factor Tu domain 2 1130 1202 IPR004161 GO:0005525
Cpe02g00883 1325 PANTHER PHOTOSYSTEM II PROTEIN D1 10 834 - -
Cpe02g00883 1325 Coils Coil 381 417 - -
Cpe02g00883 1325 Gene3D Translation factors 1114 1221 - -
Cpe02g00883 1325 CDD aeIF5B_II 1115 1220 - -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 537 555 - -
Cpe02g00883 1325 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 10 834 IPR015760 -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 149 166 - -
Cpe02g00883 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 735 829 IPR027417 -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 297 740 - -
Cpe02g00883 1325 Pfam Elongation factor Tu GTP binding domain 747 828 IPR000795 GO:0003924|GO:0005525
Cpe02g00883 1325 Pfam Elongation factor Tu GTP binding domain 895 1103 IPR000795 GO:0003924|GO:0005525
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 297 311 - -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 852 882 - -
Cpe02g00883 1325 CDD IF2_eIF5B 894 1104 - -
Cpe02g00883 1325 MobiDBLite consensus disorder prediction 577 622 - -
Cpe02g00883 1325 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 891 1107 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00592 Cpe-Chr2:3547250 Cpe02g00883 Cpe-Chr2:6270842 1.03E-20 dispersed
Cpe02g00883 Cpe-Chr2:6270842 Cpe16g00022 Cpe-Chr16:265516 4.88E-15 dispersed
Cpe01g00636 Cpe-Chr1:3671472 Cpe02g00883 Cpe-Chr2:6270842 1.04E-10 transposed
Cpe02g00883 Cpe-Chr2:6270842 Cpe06g00881 Cpe-Chr6:5819802 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00883 K03243 - csv:101204360 742.265