Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00898 AGCAAAACAATGGTGTTGAACAAGCAAAGCTCCTACTCAACTCTTCCAAGCTTCAACAATGCCAAACCAAGAACAATCCTCCATTGCTTCAACCAAGTATGGATCCTCCCTTGCTTCCTCACCTTCCTCATCGCCATCGCCTCTACCTACACACTCCTCTTCCCCAACATCCACAAACTCCTCCACATCACCCCCACGGTCCCACCTCAATGCAACGTCTTCGACGGCCAATGGGTGGAGGACAACTCCTCCACCTACCCAATCTACAACTCCACCCACTGCCCCTTCGCGGAGCGAGGGTTCAGCTGCTTGGAAAACGGGCGGAAGGACACAGCGTACATCAACTGGCGGTGGCAGCCAAAGCAATGCCACATTCCAAGGTTCGACGCTGGGAAAGCGCTGGAGATGCTGAGAGGAAAACGGGTAGTGATTGTTGGCGACTCACTCAGCCGTACACAATGGGAGTCCTGGGTTTGTATGCTGATGGAAGGTGTGGAGAATAAGGAGAGCGTTTATGAAATCAATGGGAGTAATATCACTAAGACAATTCGGCATTTGGGAGTGAGGTTTAGAGACCATAATATCAGCGTCGATTTTTATAGGTCGGTTTTTTTAATGAAGAAGGATTATAAAGTGCCCGTGGGTGCACCGAACAACGTGAGGATGACGGTTAGATTGGACGAAGTGGACGATATTCGTGACCAATGGGTTGATTCAGATGTTTTGATGGCGTTGAATACATGGGCTGATTGGGCTGAGGCTAATATCAATCCCAATAGGACATCCGAGACGAACGGGAGAGAGAAGAGTGAAAAATCAGACATAATAATTGAAGTTTTGAGGAAGAAGATGAAGAGGGTTCCGGTGAGAGTGATGCATTTAACGGCGATGGGATCGTATAGAAGCGACGCTCATGTGGGGAATTGGGGTGACAACCCAGGCATGCAAGATTGTGGCCATTGGTGTCTTCCTGGGCTTCCCGATATTTGGAATCAAATTATCTTAACTTATTTTCTTCCTAAAATCTCCTCTTTTAATTCCAACAACAATTGA 1053 47.58 SKTMVLNKQSSYSTLPSFNNAKPRTILHCFNQVWILPCFLTFLIAIASTYTLLFPNIHKLLHITPTVPPQCNVFDGQWVEDNSSTYPIYNSTHCPFAERGFSCLENGRKDTAYINWRWQPKQCHIPRFDAGKALEMLRGKRVVIVGDSLSRTQWESWVCMLMEGVENKESVYEINGSNITKTIRHLGVRFRDHNISVDFYRSVFLMKKDYKVPVGAPNNVRMTVRLDEVDDIRDQWVDSDVLMALNTWADWAEANINPNRTSETNGREKSEKSDIIIEVLRKKMKRVPVRVMHLTAMGSYRSDAHVGNWGDNPGMQDCGHWCLPGLPDIWNQIILTYFLPKISSFNSNNN 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6435115 6436805 - Cp4.1LG02g08900.1 Cpe02g00898 464847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00898 350 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 125 256 IPR026057 GO:0016740
Cpe02g00898 350 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 257 336 IPR026057 GO:0016740
Cpe02g00898 350 PANTHER PROTEIN TRICHOME BEREFRINGENCE-LIKE 7 262 339 IPR029964 -
Cpe02g00898 350 PANTHER PROTEIN TRICHOME BEREFRINGENCE-LIKE 7 24 243 IPR029964 -
Cpe02g00898 350 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 262 339 IPR029962 GO:0016413
Cpe02g00898 350 Pfam PMR5 N terminal Domain 70 124 IPR025846 -
Cpe02g00898 350 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 24 243 IPR029962 GO:0016413
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00898 - - - cpep:111787736 529.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00898 Cpe-Chr2:6435115 Cpe05g01063 Cpe-Chr5:7037914 1.80E-104 dispersed
Cpe02g00898 Cpe-Chr2:6435115 Cpe17g00130 Cpe-Chr17:819492 3.83E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1212 . . . . . . . . . . . . Car01g00885 . . . . . . . . . . . . . . . . . . Cone4ag1521 . . . . . . . . . . . . . . . . Cmo01g01032 . . . . . . Cpe02g00898 Bhi09g01514 . . . . . . Cla09g00915 Cam09g0967 Cec09g0972 Cco09g0978 . . Cre09g0936 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008701 0 1 0 0 0 2 1 2 2 1 2 2 1 1 1 1 2 1 1 2 1 1 1 3 1 2 1 1 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00898 Cpe_Chr02 FPKM 10.262948 13.093893 4.881081 4.614607 9.597693 7.260537 10.98302 0.578252 1.11131 1.02494