Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00910 ATGCCTCCCTCTCTTCAAACTAAAGATGCATCCTCTAATCTCACTCTCAAGTTTGTAGACGTGAGCTATCGAGTGAAGGTGGCGGACAAGAATGGAAATTCCTTCGGACGGATTTTCACCTGTGCCTCCGATGAGACGACGGCGGCGCCGCCCCTTCAAGAACGGAATATTCTTCATGGGATTACTGGGGGTAACGGTTTATCCGGGTCAGTGTTGGCCAATGGTCGGAAACTGACTAAATCCGTACTCCGGCGAACCGGGTTTGTGACTCAAGATGACGTCCTCTACCCACACTTAACCGTCCGAGAAACGCTCATATTCTGCTCTCTCCTTCGACTACCACTAACCCTTTCGAAGCAAGAAAAAACCGCGGTCGCCGAGTCGGTGATCGCCGAGCTCGGGTTGACAAAATGCCAGAACACGATCATCGGCAACGCCTTCATTCGCGGTGTCTCTGGCGGAGAACGAAAGAGAGTGAGCATAGCCCATGAGATGTTGATTGACCCTAGCTTACTGATTCTAGACGAGCCGACGTCGGGGCTGGACTCGACCACAGCGCATAGGCTGGTGATGACCATGGCGGGGTTGGCTCGGAAGGGGAAGACCATAATCACGTCAATTCACCAGCCATCCAGTCGGGTGTACCAAACTTTTGAGTCTGTGCTTGTGATGTCAGAAGGGCGGTGTTTGTATTATGGAAAAGGAAATGAAGCCATGACCTATTTTGAGTCCATTGGCTTCTCGCCGTCTTTTCCCATGAACCCTGCTGATTTTCTCCTAGATCTCGCCAATGGTGTGTATCAAGTTGACAATGCAAGTGAAGTGGATAAACCCATCATTAAGCAAACCCTAATTACTTCTTATAACACTCTTTTGGCTCCAAGGGTAAAGGCAGCTTGTATGGAAACTTCAACAAAGGAAACAATGTCGGGTGAACGGAAATCAACTCGAACTTGTAAAACTAGTCTGATCTTGTGGTGCTACCAATTGAACATTTTGCTTCAGAGAAATCTCAAAGAACGAAAACATGAAACGTTCAATGCGTTAAGAGTCTTCCAGGTTATAACGGCGGCGATGCTAGCGGGATTGATGTGGTGGCATTCTGATTTTCGAGATATTCAAGATCGACTTGGCCTACTCTTCTTCATTTCCATCTTTTGGGGAGTTTTCCCTTCGTTTAATGCTGTATTTGCATTCCCCCAAGAGCGAGCAATCTTCCTGAAGGAACGAGCTTCTGGTATGTACACGTTATCATCATATTTCATGGCTCGAGTCATTGGAGACCTTCCGATGGAGCTCATCCTTCCGACAATTTTTCTCACAGTTGCATATTGGATGACCGACCTGAAACCAGATCTCGTTGCTTTTCTCTTGACTTTGTTGGTCCTCCTCGGCTATGTGCTTGTATCGCAAGGGCTCGGCCTTGCTTTAGGTGCAGCAATCATGGATGCCAAACAAGCTTCGACTATAGTAACTGTGACGATGCTGGCATTTGTATTAACCGGAGGGTTTTACGTACACAAAGTACCATCATGCATGGCTTGGATCAAGTACATTTCAACGACGTATTATAGTTACAAGCTGTTCATTAATGTGCAATATGGTACCGGAGAGAAGATATGGTCGTTGCTCGGTTGCTCGCACCGTGGAAGCGAGCATCCAAGCTGCAAATTCGTGGAAGAAGATGTGGCAGGGCAAATAAGCCCTGCGTTGAGCATTGGAGCTTTGTTGTTTATGTTTGTGGGTTATAGGTTATTGGCATATTTGGCTTTGAGACGCATCAAATAG 1788 47.09 MPPSLQTKDASSNLTLKFVDVSYRVKVADKNGNSFGRIFTCASDETTAAPPLQERNILHGITGGNGLSGSVLANGRKLTKSVLRRTGFVTQDDVLYPHLTVRETLIFCSLLRLPLTLSKQEKTAVAESVIAELGLTKCQNTIIGNAFIRGVSGGERKRVSIAHEMLIDPSLLILDEPTSGLDSTTAHRLVMTMAGLARKGKTIITSIHQPSSRVYQTFESVLVMSEGRCLYYGKGNEAMTYFESIGFSPSFPMNPADFLLDLANGVYQVDNASEVDKPIIKQTLITSYNTLLAPRVKAACMETSTKETMSGERKSTRTCKTSLILWCYQLNILLQRNLKERKHETFNALRVFQVITAAMLAGLMWWHSDFRDIQDRLGLLFFISIFWGVFPSFNAVFAFPQERAIFLKERASGMYTLSSYFMARVIGDLPMELILPTIFLTVAYWMTDLKPDLVAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKQASTIVTVTMLAFVLTGGFYVHKVPSCMAWIKYISTTYYSYKLFINVQYGTGEKIWSLLGCSHRGSEHPSCKFVEEDVAGQISPALSIGALLFMFVGYRLLAYLALRRIK 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6679039 6684466 - Cp4.1LG02g09100.1 Cpe02g00910 464859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00910 595 Pfam ABC-2 type transporter 328 534 IPR013525 GO:0016020|GO:0140359
Cpe02g00910 595 Gene3D - 56 245 IPR027417 -
Cpe02g00910 595 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 67 593 - -
Cpe02g00910 595 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 8 63 - -
Cpe02g00910 595 Pfam ABC transporter 68 179 IPR003439 GO:0005524
Cpe02g00910 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 5 251 IPR003439 GO:0005524
Cpe02g00910 595 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 67 593 - -
Cpe02g00910 595 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 8 63 - -
Cpe02g00910 595 Pfam ABC-2 type transporter 208 307 IPR043926 GO:0140359
Cpe02g00910 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 245 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00910 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101214873 949.503
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00910 Cpe13g00716 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00910 Cpe-Chr2:6679039 Cpe14g00425 Cpe-Chr14:2654343 0 dispersed
Cpe02g00910 Cpe-Chr2:6679039 Cpe06g00903 Cpe-Chr6:6175733 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1240 . . . . . . . . . . . Cma09g01112 . . . . Cpe13g00716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01118 . . . . . Cpe02g00910 Bhi09g01524 . . . . Mch11g1474 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009054 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00910 Cpe_Chr02 FPKM 95.505882 105.364876 83.128876 78.114426 65.098061 54.267876 66.551483 70.685349 70.961296 71.257103