Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00925 ATGGATCCTGAAGATAGTTTGTGTAGTTCTGAAGTTTGGACAAAATCTTCATCGTTTCCTAATATTGATGCCCAGCAACCTGAACAGAAATGGGTAGATACTTCCATTTTAGACTATGCTATGGACCAGCCTTTTCAAGAATTTGAAGAACAGACCGAATCGAAGGCGTCCTTAACGTGTAACTCGAATCAACAAATTGGAATCCTGAATAAAGATGGTGATCAGATGAATGCAGCAATTCTAGGCAGTAAGGTTCAAGATTGGGATCCAAGAGCGATGCTAAGTAATCTGTCTTTTCTAGAGCAGAAGGTTCATCAGCTTCAGGAACTTGTGCATTTGATCATTGGGCGGAGGAGCCAAGTGTTGGGGAGGCCAGATGAACTCGTAGTTCAGCAACAACAGCTGATAACTGCTGATCTAACTTCAATTATTGTTCAGTTAATCTCAACAGCAGGTAGTCTGCTTCCTTCTGTAAAGCATAACTTTTCTGCAGCTGTTCCTCTGGTCGGGCAGCTAGAGGCGCCGCTCGACAGGGTTCTTTTTGCATCTGAATCTGGGACGAAGAATGGCGTTGTTCAGTCGCAACATGGTGATGGAACTAAACTTCCCGAGGTTCCAACCCAAGTAGACGAGAGTAGCAAGTATGGGAAGGAACGGATTGAAGAACACGAATCGAAGGATGAAGAAGACGCAGATGAAAGCGAGAACCTCCCCCCAGGTTCATATGAAATATTGCAACTAGAAAAAGAAGAGATCCTAGCACCTCACACTCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCATATGAGGGGTCACGGTGACGAATACAAAACCGCTGCTGCTCTTGCAAAGCCGAACAAAGAAGCGAGTTATGAGACGATGCTGATTAAGAGGTACTCGTGCCCCTTCACGGGGTGCAAACGGAACAAGGATCATAAGAAGTTTCAGCCTCTAAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCCAAGAAGTTCTCAGTAATTGCTGATCTCAAAACACACGAAAAGCACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTGTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGAAGAATCGAAGGGAACAGCCATGTCCTGTGATCGAGGAGAACGCTACGAAACAGCGAATAAGCTCGGGAGTATAAATTTCAGTTTTGGGTCGATTGCTTCGGGAGGAAGTTCAGTTGAAACCATAGCAGCAGCAGATGCAAAAGGTGGTGTTGATGATCCTCTTACATATTTCTCGCCATTGAACTTCGATCCGTGTAATTTTGGTGGCTATCACGAGTTTCCTCGACCACCATTCGAGAACGCAGAGAATGCGTTTTCGTTCCTTATCCCGACATCTAGCAATTACAACCAAAAATCTGGCGCAGAATCAAGCTGTAATAACCTTGAATGA 1542 44.23 MDPEDSLCSSEVWTKSSSFPNIDAQQPEQKWVDTSILDYAMDQPFQEFEEQTESKASLTCNSNQQIGILNKDGDQMNAAILGSKVQDWDPRAMLSNLSFLEQKVHQLQELVHLIIGRRSQVLGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNFSAAVPLVGQLEAPLDRVLFASESGTKNGVVQSQHGDGTKLPEVPTQVDESSKYGKERIEEHESKDEEDADESENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEASYETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEESKGTAMSCDRGERYETANKLGSINFSFGSIASGGSSVETIAAADAKGGVDDPLTYFSPLNFDPCNFGGYHEFPRPPFENAENAFSFLIPTSSNYNQKSGAESSCNNLE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7447298 7449916 - Cp4.1LG02g09270.1 Cpe02g00925 464874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00925 513 Gene3D Classic Zinc Finger 242 311 - -
Cpe02g00925 513 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 496 - -
Cpe02g00925 513 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Cpe02g00925 513 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 496 IPR044300 GO:0010044|GO:0010447
Cpe02g00925 513 SUPERFAMILY beta-beta-alpha zinc fingers 256 284 IPR036236 -
Cpe02g00925 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
Cpe02g00925 513 SMART c2h2final6 307 340 IPR013087 -
Cpe02g00925 513 SMART c2h2final6 258 280 IPR013087 -
Cpe02g00925 513 SMART c2h2final6 345 367 IPR013087 -
Cpe02g00925 513 MobiDBLite consensus disorder prediction 190 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00925 Cpe-Chr2:7447298 Cpe20g00726 Cpe-Chr20:6157225 2.06E-71 dispersed
Cpe19g00758 Cpe-Chr19:5830957 Cpe02g00925 Cpe-Chr2:7447298 1.16E-79 transposed
Cpe02g00925 Cpe-Chr2:7447298 Cpe06g00929 Cpe-Chr6:6880916 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49045 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00925 - - cmax:111471438 995.727