Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00968 ATGGCTTTCTGGGTGTTTTTCTTCTTGATCTTTGGTTCTGTTCCGCTTGTTCCTGCTCTTACTCTTGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCACAGCTGACTGGCTGGATTGGTAGTGGCGGTGATCCATGTGTTGAGTTATGGAAAGGGGTGACTTGTGAAGGCTCTGCTGTTGTCTCCATTGAGATTTCCGGGTTGGGGCTGAATGGCACGATGGGCTATGCGCTCTCGAGCCTTATTTCATTGAGAAATCTTGATATGAGCGACAACAATATTCACGACACGATTCCTTACCAATTACCACCGAACCTCACGAGCCTAAATATGGCAAAAAACAAATTAACTGGTAATCTTCCTTATTCACTTTCCACCATGGCTTCTCTCAATTATCTGAATATGAGCCATAATTTGCTAGCTCAGGCGATAGGAGACGTTTTCACGAATCTTACTTCCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACCGGGGATCTTCCGATTTCCTTGAGCTCATTGTTGAATATTTCTTCTCTCTTTTTACAGAACAACCAATTGACTGGTTCGCTCAATAATCTTATCAGTTTGCCTCTAACGACGCTAAATGTAGCGAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATCGAAAATTTCATATACGATGGTAATTCATTCGACAACAGTCCTGCACCTCCTCCACCCCCTTTCACTCCACCTCCTCCTGGTCGATCTCGTAACAGCCCCCGACACCCTGGGTCCGGCGGTGGCAACCACACTGCCTCAAGCTCTGATAGCAGTTCATCAAACTCGAAGAAAGGCTTGTCAGTTTTGGAAATAGTAGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTGGTTGCTTTTGCTGTATGCATCCAGAAGAGAAAACGGAAGAACATCGGTCTACGAGCTTCGAGCGGAAGGCTGTCTATTGGCACTAGCGTGAATACGGAGGTGCACGAGCATCGGGTTAAAAGCGTTGCTGCTGTTGCAGATATTAAGCCACTCCCTGCGGAGAAAATGAATCCCGAGAGATTACAAGCGAAAAACGGATCGGTGAAAAGGATAAAGTCCCCTATTACTGCAACTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGTCAAGAATGCATAGTCGGTGAAGGCTCTCTCGGTCGTGTTTACAAAGCCGAGTTTCCAAACGGGAAGATAATGGCAATCAAGAAAATCGACAATGCGGCGTTGTCGCTACAGGAAGAAGACAATTTTCTTGAAGCGGTCTCAAACATGTCAAGATTGAGGCACACGAATATTGTGACACTAAATGGTTATTGCGTCGAGCATGGTCAGCGTCTTCTCGTTTACGAGTTCATTGGAAATGGAAGTTTACACGACATGCTCCATTTTGCTGAAGATAGTAGCAAGACACTGACTTGGAACGCCCGTGTCCGAGTAGCACTTGGAACAGCTCGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACAGCAAACATATTACTGGATGAAGAGCTCAACCCCCATTTGTCTGATTCCGGTTTGGCTGCTTTAACGCCCAACACAGAGCGACAGTTCGAGGGTGAGATCGGAGCAGTCGCTTGTGAGATGGGCTACTCCCCAACTTCACGATATTGA 1737 45.08 MAFWVFFFLIFGSVPLVPALTLASDVQALQVIYTSLNSPPQLTGWIGSGGDPCVELWKGVTCEGSAVVSIEISGLGLNGTMGYALSSLISLRNLDMSDNNIHDTIPYQLPPNLTSLNMAKNKLTGNLPYSLSTMASLNYLNMSHNLLAQAIGDVFTNLTSLGTLDLSFNNFTGDLPISLSSLLNISSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFDNSPAPPPPPFTPPPPGRSRNSPRHPGSGGGNHTASSSDSSSSNSKKGLSVLEIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIGTSVNTEVHEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCVEHGQRLLVYEFIGNGSLHDMLHFAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDSGLAALTPNTERQFEGEIGAVACEMGYSPTSRY 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8570055 8579112 - Cp4.1LG02g09690.1 Cpe02g00968 464917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00968 578 Gene3D Phosphorylase Kinase; domain 1 360 476 - -
Cpe02g00968 578 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Cpe02g00968 578 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 573 - -
Cpe02g00968 578 MobiDBLite consensus disorder prediction 240 259 - -
Cpe02g00968 578 Pfam Protein kinase domain 401 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00968 578 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8-LIKE ISOFORM X1 10 573 - -
Cpe02g00968 578 SUPERFAMILY Protein kinase-like (PK-like) 379 559 IPR011009 -
Cpe02g00968 578 MobiDBLite consensus disorder prediction 263 283 - -
Cpe02g00968 578 ProSiteProfiles Protein kinase domain profile. 399 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g00968 578 Gene3D Ribonuclease Inhibitor 20 250 IPR032675 -
Cpe02g00968 578 SUPERFAMILY L domain-like 22 228 - -
Cpe02g00968 578 Gene3D Transferase(Phosphotransferase) domain 1 477 576 - -
Cpe02g00968 578 MobiDBLite consensus disorder prediction 237 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00968 - - - csv:101216091 938.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00968 Cpe-Chr2:8570055 Cpe17g00420 Cpe-Chr17:3144363 1.61E-156 dispersed
Cpe02g00968 Cpe-Chr2:8570055 Cpe20g00626 Cpe-Chr20:3917624 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00762 CST 33 782 Strubbelig Receptor Gene Family AT4G03390 62.4 1.9e-206 716.5
Cpe15g00790 CST 68 761 Strubbelig Receptor Gene Family AT4G03390 60.0 2.7e-181 632.9
Cpe12g00545 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 8.9e-92 335.5
Cpe17g00420 CCT,CST 417 720 Strubbelig Receptor Gene Family AT4G03390 55.8 1.9e-89 327.8
Cpe03g00381 . 17 738 Strubbelig Receptor Gene Family AT5G06820 52.7 1.1e-179 627.5
Cpe08g01391 CCT 9 720 Strubbelig Receptor Gene Family AT5G06820 52.6 3.1e-179 625.9
Cpe01g00878 . 10 724 Strubbelig Receptor Gene Family AT1G78980 56.9 7.1e-181 631.3
Cpe03g01037 . 23 724 Strubbelig Receptor Gene Family AT1G78980 51.8 1.3e-153 540.8
Cpe17g00420 CCT,CST 44 723 Strubbelig Receptor Gene Family AT1G78980 50.4 5.0e-126 449.1
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT1G78980 52.9 1.1e-83 308.5
Cpe04g00762 CST 32 656 Strubbelig Receptor Gene Family AT2G20850 50.6 1.2e-129 461.1
Cpe01g00878 . 5 702 Strubbelig Receptor Gene Family AT3G13065 50.4 8.9e-136 481.5
Cpe17g00420 CCT,CST 38 718 Strubbelig Receptor Gene Family AT3G13065 50.2 6.9e-104 375.6
Cpe12g00545 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.1 7.9e-100 362.1
Cpe20g00626 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.2e-85 313.2
Cpe12g00545 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.3e-83 307.4
Cpe17g00420 CCT,CST 430 718 Strubbelig Receptor Gene Family AT1G11130 52.6 1.2e-82 305.1
Cpe04g00762 CST 32 656 Strubbelig Receptor Gene Family AT2G20850 50.6 1.2e-129 461.1
Cpe03g00381 . 17 738 Strubbelig Receptor Gene Family AT5G06820 52.7 1.1e-179 627.5
Cpe08g01391 CCT 9 720 Strubbelig Receptor Gene Family AT5G06820 52.6 3.1e-179 625.9
Cpe04g00762 CST 33 782 Strubbelig Receptor Gene Family AT4G03390 62.4 1.9e-206 716.5
Cpe15g00790 CST 68 761 Strubbelig Receptor Gene Family AT4G03390 60.0 2.7e-181 632.9
Cpe12g00545 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 8.9e-92 335.5
Cpe17g00420 CCT,CST 417 720 Strubbelig Receptor Gene Family AT4G03390 55.8 1.9e-89 327.8
Cpe01g00878 . 5 702 Strubbelig Receptor Gene Family AT3G13065 50.4 8.9e-136 481.5
Cpe17g00420 CCT,CST 38 718 Strubbelig Receptor Gene Family AT3G13065 50.2 6.9e-104 375.6
Cpe12g00545 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.1 7.9e-100 362.1
Cpe01g00878 . 10 724 Strubbelig Receptor Gene Family AT1G78980 56.9 7.1e-181 631.3
Cpe03g01037 . 23 724 Strubbelig Receptor Gene Family AT1G78980 51.8 1.3e-153 540.8
Cpe17g00420 CCT,CST 44 723 Strubbelig Receptor Gene Family AT1G78980 50.4 5.0e-126 449.1
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT1G78980 52.9 1.1e-83 308.5
Cpe03g01037 . 1 724 Strubbelig Receptor Gene Family AT1G53730 59.6 2.3e-211 732.6
Cpe02g01752 CCT 557 1203 Strubbelig Receptor Gene Family AT1G53730 56.9 7.8e-183 637.9
Cpe17g00420 CCT,CST 33 731 Strubbelig Receptor Gene Family AT1G53730 59.1 8.9e-179 624.4
Cpe12g00545 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.9 1.3e-177 620.5
Cpe20g00626 . 4 689 Strubbelig Receptor Gene Family AT1G53730 50.5 8.7e-142 501.5
Cpe15g00790 CST 461 753 Strubbelig Receptor Gene Family AT1G53730 57.3 6.6e-89 325.9
Cpe03g01037 . 8 719 Strubbelig Receptor Gene Family AT3G14350 50.8 2.0e-180 629.8
Cpe17g00420 CCT,CST 42 729 Strubbelig Receptor Gene Family AT3G14350 54.2 5.2e-160 562.0
Cpe12g00545 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 53.6 9.2e-157 551.2
Cpe15g00790 CST 460 761 Strubbelig Receptor Gene Family AT3G14350 52.6 7.2e-77 285.8
Cpe20g00626 . 344 711 Strubbelig Receptor Gene Family AT4G22130 79.6 3.2e-168 589.0
Cpe03g01037 . 408 731 Strubbelig Receptor Gene Family AT4G22130 63.8 2.1e-119 426.8
Cpe12g00545 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.6 2.6e-117 419.9
Cpe17g00420 CCT,CST 424 733 Strubbelig Receptor Gene Family AT4G22130 65.4 2.9e-116 416.4
Cpe04g00762 CST 450 774 Strubbelig Receptor Gene Family AT4G22130 56.8 3.5e-106 382.9
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT4G22130 60.3 8.7e-105 378.3
Cpe01g00878 . 407 724 Strubbelig Receptor Gene Family AT4G22130 55.7 5.8e-101 365.5
Cpe02g00968 . 332 573 Strubbelig Receptor Gene Family AT4G22130 75.2 5.7e-96 349.0
Cpe03g00381 . 392 714 Strubbelig Receptor Gene Family AT4G22130 51.7 8.5e-92 335.1
Cpe02g01752 CCT 953 1219 Strubbelig Receptor Gene Family AT4G22130 51.1 1.8e-86 317.4
Cpe03g00382 CCT 281 582 Strubbelig Receptor Gene Family AT4G22130 50.3 1.1e-80 298.1
Cpe10g00833 . 439 622 Strubbelig Receptor Gene Family AT4G22130 54.9 2.4e-54 210.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004508 2 2 2 1 0 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 1 1 0 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62225 PF00069 Pkinase 1.70E-27 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00968 Cpe_Chr02 FPKM 23.336634 25.429462 25.118544 27.741465 22.643023 19.595398 24.471006 28.588545 30.14076 33.05191