Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00980 ATGCACAAAAACATATATGCAAGCAATGTTCCAAACAGGAAGCAGGAAGGCAGAAAAATGAGGGGAAAGCCAATGACTGGTAAACTCACCTTGTTTCTTTGTTTTGCGAGCTTTCTTGCTGGCTCGCTCTTCACTGCCCGCACCAGTATTCATACTAGAGACCCTCAGTTTCTCAACCATCTCGAAAATCTTGAAGCTGTACAAGATTGTGACCACAAACGAAAATTAGTAGAATCAAGTGATCAGGACATTATGGTGGAAATCTCTGGAGAAAACGTTCGAAAATTGGGAGATGGAAATGGCTCTATCTCGAACGAACGGGAGAAATCAAAGAACTCCGCCGGAGAAGGCGTTCGTGGTGATCGGAATCAACACGGCTTTCAGCAGCAAGAAACGCCGAGACTCGATTCGAGAGACATGGATGCCTCGAGGTCCGTAAAAACCAAAACCCTAACTCAAATACGAAACTCACACAGAAATCGGCATCAGATTGAGCAATTGATAACCGGCGCAGGAGACTCGCTGAAGAAACTAGAGAAAGAGAAGGGGATAGTGATCCGATTCGTCATAGGAAAGAGTGGAAGACCTGGTGGAGCATTGGACAGAGCCATAGACGAGGAGGAGGAGGTGCACGGTGACTTTCTGCGGCTGAGACATGTGGAAGATTACCATCAACTATCGACGAAGACACGGCTGTATTTCACCACCGCCGCGTCGCTGTGGGCGGCGGAGTTCTACGTCAAGGTTGACGACGATGTTCATATAATGGAAATGAACAGGGGACTAAAGTATCACGAGCCCGAGTACTGGAAATTCGGAGAAGAAGGGAACGAGTATTTCCGGCATGCCACTGGTCAAATCTACGTCATTTCTAAAGACCTTGCTGCTTACATTTCCCTTAATTTGTATGCGAATGAAGACGTGTCGTTGGGAGCTTGGTTCATTGGGTTAGAAGTGGAACACGTGGATGATCGTTCCATGTGTTGCGGGACACCTCCAGATTGCGAACCAAAATCGAATGGGGGGAATGTGTGCGTGGCAACTTTTGATTGGTCGTGTAGTGGGATTTGTGAATCGGTAGATAAAATGAAGGAGGTCCATAAGTTATGTGGAGAAGGCAATGCAGCTATTTGGAACGTTGACGTTTAA 1149 46.74 MHKNIYASNVPNRKQEGRKMRGKPMTGKLTLFLCFASFLAGSLFTARTSIHTRDPQFLNHLENLEAVQDCDHKRKLVESSDQDIMVEISGENVRKLGDGNGSISNEREKSKNSAGEGVRGDRNQHGFQQQETPRLDSRDMDASRSVKTKTLTQIRNSHRNRHQIEQLITGAGDSLKKLEKEKGIVIRFVIGKSGRPGGALDRAIDEEEEVHGDFLRLRHVEDYHQLSTKTRLYFTTAASLWAAEFYVKVDDDVHIMEMNRGLKYHEPEYWKFGEEGNEYFRHATGQIYVISKDLAAYISLNLYANEDVSLGAWFIGLEVEHVDDRSMCCGTPPDCEPKSNGGNVCVATFDWSCSGICESVDKMKEVHKLCGEGNAAIWNVDV 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8800277 8802497 - Cp4.1LG02g09800.1 Cpe02g00980 464929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00980 382 Pfam Galactosyltransferase 263 324 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cpe02g00980 382 Pfam Galactosyltransferase 179 256 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cpe02g00980 382 Pfam Domain of unknown function (DUF4094) 27 90 IPR025298 -
Cpe02g00980 382 MobiDBLite consensus disorder prediction 95 145 - -
Cpe02g00980 382 MobiDBLite consensus disorder prediction 1 21 - -
Cpe02g00980 382 MobiDBLite consensus disorder prediction 101 118 - -
Cpe02g00980 382 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 24 255 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cpe02g00980 382 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 261 373 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cpe02g00980 382 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 1-RELATED 24 255 - -
Cpe02g00980 382 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 1-RELATED 261 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00980 K20855 B3GALT1S; beta-1,3-galactosyltransferase 1/2/3/4/5/7/8 [EC:2.4.1.-] - csv:101218850 485.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00980 Cpe-Chr2:8800277 Cpe05g00763 Cpe-Chr5:4725677 8.71E-109 dispersed
Cpe06g00648 Cpe-Chr6:4020831 Cpe02g00980 Cpe-Chr2:8800277 4.88E-10 dispersed
Cpe02g00980 Cpe-Chr2:8800277 Cpe05g01439 Cpe-Chr5:10042628 6.70E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1767 Blo01g01692 . . . Bpe02g00250 . . . . . Cma01g00885 . Car01g00808 . . . . . . . . . . . Cla08g00185 . Cec08g0060 Cco08g0256 . Cmu08g0174 Cre08g0162 . . . . . . . Cme09g00126 . . . . . . . . Sed10g1654 Cmo01g00930 . . . . . . Cpe02g00980 Bhi06g00106 Tan10g1831 Cmetu09g1351 . . . . . . . . . . . Lsi08g00182 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000108 2 11 7 7 7 6 10 7 6 7 7 7 10 7 7 11 7 7 10 7 7 7 7 7 7 6 7 17 14 6 235
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g00980 Cpe_Chr02 FPKM 0.056704 0.0 0.0 0.085845 0.018169 0.0 0.0 0.0 0.0 0.015685