Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe02g00983 | ATGGTTCTATTTGAACAAGTTGTGTGTAAGAAAGCTGGTCATGTTGACCATGCTTTTGGGTCACATCCTTTCTCATCTGGAGTCGGCATTCCAGGACAAAAGTTTACTCATACAGTCCCAAAGAATGAAAATGACCGAGTTTATGCTGCTTATAATGTATATAAGGGCAAAGCTGGAGTCTCAATGTTTCCTTGTCTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAATACTGCTGACGTTCTTTCCTGCCATAGGGGAGCGCAAGTATGATTGGACAAAAAAACAGTTCTTTTCATTGTCCCCAACAGAGGTTGGTACTTTAATAAATTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTGATAACACGAAAAGTACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACAGCTTGCAGTTTTGCCCTGCCTCACATTCTTGGTTGGGATCGGCTGACAAAACCCAGTCTTGGCATGGAAAAGGGTTTTCAACCAAACAAGGTGAATCGTGAAGGATTGAGTTTAGAGTGGAAAAGATGA | 690 | 42.03 | MVLFEQVVCKKAGHVDHAFGSHPFSSGVGIPGQKFTHTVPKNENDRVYAAYNVYKGKAGVSMFPCLPTFTKLESGSLVIDRRGSILLTFFPAIGERKYDWTKKQFFSLSPTEVGTLINLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVDNTKSTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSLGMEKGFQPNKVNREGLSLEWKR | 229 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 8879837 | 8896259 | + | Cp4.1LG02g11070.1 | Cpe02g00983 | 464932 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe02g00983 | 229 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 44 | 229 | IPR009044 | GO:0003677|GO:0006355 | |
| Cpe02g00983 | 229 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 9 | 229 | - | - | |
| Cpe02g00983 | 229 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 9 | 229 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
| Cpe02g00983 | 229 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 40 | 212 | IPR009044 | GO:0003677|GO:0006355 | |
| Cpe02g00983 | 229 | Pfam | Whirly transcription factor | 53 | 187 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00983 | Cpe-Chr2:8879837 | Cpe11g00753 | Cpe-Chr11:6021650 | 4.18E-31 | dispersed | |
| Cpe02g00983 | Cpe-Chr2:8879837 | Cpe07g00617 | Cpe-Chr7:4277112 | 2.92E-47 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49050 | PF08536 | Whirly | 1.00E-51 | CL0609 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe02g00983 | - | - | csv:101219085 | 345.895 |