Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00984 ATGGCTTACGACCATTTGGATCGATCAAAAGGCTATTCAGTTGCTTCTGGGCCAGGTCCAGCTTCAAAGCCTGCATCTGAAATGAAGATCTATCAGTTCTTTGTTTTCTGTATTCCAATTGTTGTCACTTTCATTATTCTCCTCCTGTTCTATCTCCTTTACCTTCGTCGCCGAAGGGCTGATTGGAGCTCCATCCGAATGCGAACCTCTACTGCAGTCACCAACAATGACATCTCAACAGCTGAAGTTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCCATTATTGTGTACAATGAGTCATTCTTTGTCACTGACACACAATGTTCAGTCTGTTTAGGGGAATACAAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGAATGCATTGATCATTGGCTATCCAACCACACTACTTGCCCGCTCTGTCGCCACTCCGTCCTTTCTCCGTTGCCTCAAACGCCACATGTTCAGATCGATATGGGACTCGAGTCATCGAATGAACAACAACACGAAGAAGCAACTCCCCCAGACAGTAATCAAGCTTGTCAACATACAACATCTCCGGTGTAA 594 44.61 MAYDHLDRSKGYSVASGPGPASKPASEMKIYQFFVFCIPIVVTFIILLLFYLLYLRRRRADWSSIRMRTSTAVTNNDISTAEVGLKKEFREMLPIIVYNESFFVTDTQCSVCLGEYKTEDKLQKIPSCGHVFHLECIDHWLSNHTTCPLCRHSVLSPLPQTPHVQIDMGLESSNEQQHEEATPPDSNQACQHTTSPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8896313 8898493 - Cp4.1LG02g11010.1 Cpe02g00984 464933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00984 197 Pfam Ring finger domain 108 151 IPR001841 -
Cpe02g00984 197 SUPERFAMILY RING/U-box 93 162 - -
Cpe02g00984 197 MobiDBLite consensus disorder prediction 173 197 - -
Cpe02g00984 197 MobiDBLite consensus disorder prediction 1 20 - -
Cpe02g00984 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 157 IPR013083 -
Cpe02g00984 197 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 21 190 - -
Cpe02g00984 197 SMART ring_2 109 150 IPR001841 -
Cpe02g00984 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cpe02g00984 197 CDD RING-H2_EL5_like 108 151 - -
Cpe02g00984 197 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 21 190 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00984 Cpe06g00948 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00984 Cpe-Chr2:8896313 Cpe13g00098 Cpe-Chr13:712130 1.63E-26 dispersed
Cpe02g00984 Cpe-Chr2:8896313 Cpe06g00948 Cpe-Chr6:8004463 1.48E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00984 K19039 - csv:101219324 319.316