Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01018 ATGGAGAGATTTGAGCCATTGGCTATGATTGCAATGATTTTGACAATTTGTTTGTGTTTGAGTACTCCTAAGGCTTGCTCACAGGCGGATCAGGGCGGCGGTGTTCCTGGATTCTTCATTTTTGGTGATTCCTTGGTGGATAATGGGAACAACAATGGTTTACTTACCCTTGCAAGAGCCAATTATAGGCCTTATGGAGTTGATTTCCCACAGGGCACTACTGGCCGCTTCACCAATGGCCGGACATTCGTTGATGTCTTAGCTCAGCTACTGGGGTTTCGGACATTCATTCCTCCATACACTAGAACTCGAGGTAGAGCCCTTCTAAGAGGAGCAAATTATGCATCGGGCGCTGCAGGGATTCGTGATGAGACTGGAAACAATTTGGGTGGTCATGTATCTATGAACAACCAAGTGGAGAACTTTGGAAGAACGCAATTGTACCAATTCGGAGCTCGAAAAGTGGTGGTGACAGGGGTGGGGATGATCGGCTGCATTCCTTACGAGCTTGCTAGATATCAAGGCAATAGTAGCCGCTGCAACGAAGAGATCAACAGCGCCATCAGTCTTTTCAACACCGGCCTTCGCAAACTCGTTGACCGTTTCAACAGCGGCCGCGTTCTTCCCGGTGCCAAGTTTGTGTACCTTGATACCTACAAAAGCAACATCGACTTGATTGACAATGCCTCCACATACGGGTTCACCGTGGTAGACAAGGGATGTTGTGGAGTGGGCAAAAACAATGGACAAATTACATGTCTGCCACTGCAGCAACCATGTCAAGATCGACGAGGCTACTTGTTTTGGGACGCATTCCATCCCACTCAGGACGCCAATATTGTGTTGGCCAAGATGGCATTCAGCTCCCCTTCAAGAGCCTATGCATATCCCATTAACATTCAGCAATTGGCAGCGTTGTAG 921 48.1 MERFEPLAMIAMILTICLCLSTPKACSQADQGGGVPGFFIFGDSLVDNGNNNGLLTLARANYRPYGVDFPQGTTGRFTNGRTFVDVLAQLLGFRTFIPPYTRTRGRALLRGANYASGAAGIRDETGNNLGGHVSMNNQVENFGRTQLYQFGARKVVVTGVGMIGCIPYELARYQGNSSRCNEEINSAISLFNTGLRKLVDRFNSGRVLPGAKFVYLDTYKSNIDLIDNASTYGFTVVDKGCCGVGKNNGQITCLPLQQPCQDRRGYLFWDAFHPTQDANIVLAKMAFSSPSRAYAYPINIQQLAAL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9366898 9369187 + Cp4.1LG02g10750.1 Cpe02g01018 464967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01018 306 PANTHER OS12G0274200 PROTEIN 10 145 - -
Cpe02g01018 306 PANTHER OS12G0274200 PROTEIN 145 306 - -
Cpe02g01018 306 Gene3D SGNH hydrolase 24 141 IPR036514 -
Cpe02g01018 306 Gene3D SGNH hydrolase 142 292 IPR036514 -
Cpe02g01018 306 Pfam GDSL-like Lipase/Acylhydrolase 39 144 IPR001087 GO:0016788
Cpe02g01018 306 Pfam GDSL-like Lipase/Acylhydrolase 146 284 IPR001087 GO:0016788
Cpe02g01018 306 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 145 306 - -
Cpe02g01018 306 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 10 145 - -
Cpe02g01018 306 CDD SGNH_plant_lipase_like 36 290 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01018 - - - cpep:111788433 513.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01018 Cpe-Chr2:9366898 Cpe20g00279 Cpe-Chr20:1561026 6.20E-75 dispersed
Cpe02g01018 Cpe-Chr2:9366898 Cpe06g01006 Cpe-Chr6:10177074 1.97E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1661 . . . . . . . Bma01g02439 . . . . Car01g00778 . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00039 . . . . . . . . . . . . . . . . Cpe02g01018 . . . . . . . Cla11g00844 Cam11g0875 Cec11g0875 Cco11g0870 Clacu11g0987 Cmu11g0838 Cre11g1319 Lsi08g00048 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012385 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g01018 Cpe_Chr02 FPKM 1.621753 1.68128 8.018703 10.220789 8.044337 10.123034 7.908645 0.169839 0.266736 0.155258