Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01021 ATGGGTAGAGGAAAGATTGAGATAAAGAGAATCGAAAACACAACAAATCGTCAGGTCACCTTCTGCAAGAGAAGAAATGGTCTCTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCCAACAACAGTATCAAAACTACTATTGATAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCCACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCAGCAAAGCTGCGCCAACAAATCCAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTGAAAGAACTGAAGCAGCTGGAGAATAGGCTCGAAAGAGGCATCACTAGGATCAGATCAAAGAAGCATGAAATGTTGCTAGCTGAAATTGAGTACCTGCAGAAACGGATAGCAGAGGTGGAGAGGCTTCATCAAGCAAACATGGAGTCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATCATGGAAGGTGGAGCTGTCACTTTCTCTCACCAAGACTAG 609 43.68 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIDRYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKRIAEVERLHQANMESGQELNAIQALASRNFFSPNIMEGGAVTFSHQD 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9380290 9384804 + Cp4.1LG02g10680.1 Cpe02g01021 464970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01021 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe02g01021 202 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Cpe02g01021 202 Pfam K-box region 86 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe02g01021 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe02g01021 202 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 198 - -
Cpe02g01021 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 198 - -
Cpe02g01021 202 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cpe02g01021 202 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Cpe02g01021 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe02g01021 202 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe02g01021 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe02g01021 202 Coils Coil 124 163 - -
Cpe02g01021 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe02g01021 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe02g01021 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01021 Cpe-Chr2:9380290 Cpe10g00122 Cpe-Chr10:785283 1.42E-91 dispersed
Cpe05g01055 Cpe-Chr5:6984166 Cpe02g01021 Cpe-Chr2:9380290 1.52E-12 dispersed
Cpe14g00230 Cpe-Chr14:1323554 Cpe02g01021 Cpe-Chr2:9380290 1.33E-34 dispersed
Cpe14g00580 Cpe-Chr14:3685015 Cpe02g01021 Cpe-Chr2:9380290 8.72E-24 dispersed
Cpe02g01021 Cpe-Chr2:9380290 Cpe06g01008 Cpe-Chr6:10224939 4.32E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49051 PF01486 K-box 1.80E-23 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01021 K09264 - csv:101208072 358.221