Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01049 AAGGGATTCACGTTTTGTGTAGGTTCTGATTTATCAGTTATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGAGGCTGTGGTAGCGGGGTAAAGAGTGGGGGAGATGGGTTTATAGACAGGAGCAAAGTTAGGATTTTGCTGTGCGATAATGATTCCAAAAGTGCAGATGAGGTTTACAAGCTTCTTTTGAAATGTTCTTACCAAGTCATTTCCGTGAGTTCGGCTAGACAGGTCATTGATGCTTTGAATGCGGAAGGACCTGAAATTGATATTATACTCTCGGAAGTTGACCTACCAATGGCCAAAGGTATGAAAATGTTGAAGTACATCACTCGGGATAAAGAGCTGCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATAGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGAACAAATGAGCTATTAAACTTATGGACACACATGTGGAGAAGAAGACGCATGCTTGGACTGGCAGAAAAGAACATCTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGTGATGCTAATACAAATAGTACTACTTTGTTCTCGGATGACACGGATGACAAGTCACGTAGGAGCACAAATCCGGAGATGGGAATTGCAACACATCAGGAAGATGAGTCTGGTATTGCTTCTGCACTGGTAGAGCTTCCTGCTGTTTATTCTGTGGAACATCAGCCAGATGTACCTGGAATTAGTGAGCGTCGAACAGGGCAACTTTTATCATGCCCTAGAAAGAGTGAACTAAAGATCGGTGAATCATCTGCATTCTTTACATATGTCAAATCAAGAACTCTAAAAAACAAGGCAGTAGATGAAGAAGACAATGCCAAACGACTTTTGCTGGATGAAAATCATCAAGAAACTGGTCAGCACCCAGTTCGTCTTCCCCAAATACAAGAAAGTGGGGAGGCCTTGGAAACCCATTCACAAGGAGACGAGTTCCCAAGCAGTACTAGTTTTCCTGATTCTTTTTCTATGGAGAAATCTTGTACGCCACCTGCTGGCTCAGAAGTTCACAGGGAAGGAAACATCAATGAAGAAAATCGCTCTCAAGTGCATGTGCATCCTCAAAATGGATCTCAACATGATATGTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCGTTCTATATGCCAGAAGGTATGATGTCGGCGCAACTGTACCAAAAGAACCTGCATGATATGCAAAATCGTGCGGCAATGATGTCACAATATGGTCAATTTCATCATTGTCCTCCCAATATAAGTGGTGTTGCATCTTATCCTTATTACCCTATGAATATATGTTTACAACCTGGTCAAATGTCAGCTTCTACCAATACTCATTCATGGCCATCTTTTGGAAATTCATCTTCCAATGAAGCAAAATCGAACAAATTGGATAGAAGAGAGGCTGCACTGATTAAATTTAGGCAGAAAAGGAAAGAGCGTTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGAGGCCAGTTTGTTAGAAAGGTAAATGGTGTCAATGTAGATCTAAATGGACATCCTGCATCAGCTGATGATGTCGAGGATGAAGATGACGATGAGGAGCAACTATCAAGGGATTCCTCTCATGAAGATGATGTTTCAGGATATTAG 1701 41.92 KGFTFCVGSDLSVMDCKELNLNEDCGGCGSGVKSGGDGFIDRSKVRILLCDNDSKSADEVYKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPEMGIATHQEDESGIASALVELPAVYSVEHQPDVPGISERRTGQLLSCPRKSELKIGESSAFFTYVKSRTLKNKAVDEEDNAKRLLLDENHQETGQHPVRLPQIQESGEALETHSQGDEFPSSTSFPDSFSMEKSCTPPAGSEVHREGNINEENRSQVHVHPQNGSQHDMSGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNRAAMMSQYGQFHHCPPNISGVASYPYYPMNICLQPGQMSASTNTHSWPSFGNSSSNEAKSNKLDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGHPASADDVEDEDDDEEQLSRDSSHEDDVSGY 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9664362 9670392 - Cp4.1LG02g10310.1 Cpe02g01049 464998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01049 566 SUPERFAMILY CheY-like 43 171 IPR011006 -
Cpe02g01049 566 ProSiteProfiles Response regulatory domain profile. 46 164 IPR001789 GO:0000160
Cpe02g01049 566 MobiDBLite consensus disorder prediction 458 479 - -
Cpe02g01049 566 ProSiteProfiles CCT domain profile. 483 525 IPR010402 GO:0005515
Cpe02g01049 566 Pfam CCT motif 483 525 IPR010402 GO:0005515
Cpe02g01049 566 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 543 IPR045279 GO:0009736
Cpe02g01049 566 Gene3D - 45 258 - -
Cpe02g01049 566 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 17 543 - -
Cpe02g01049 566 SMART REC_2 45 160 IPR001789 GO:0000160
Cpe02g01049 566 MobiDBLite consensus disorder prediction 541 555 - -
Cpe02g01049 566 MobiDBLite consensus disorder prediction 458 475 - -
Cpe02g01049 566 MobiDBLite consensus disorder prediction 190 220 - -
Cpe02g01049 566 MobiDBLite consensus disorder prediction 322 349 - -
Cpe02g01049 566 MobiDBLite consensus disorder prediction 322 359 - -
Cpe02g01049 566 MobiDBLite consensus disorder prediction 529 566 - -
Cpe02g01049 566 Pfam Response regulator receiver domain 47 158 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01049 Cpe-Chr2:9664362 Cpe05g00576 Cpe-Chr5:3487535 4.13E-16 dispersed
Cpe02g01049 Cpe-Chr2:9664362 Cpe20g00010 Cpe-Chr20:65704 0 wgd
Cpe02g01049 Cpe-Chr2:9664362 Cpe04g01485 Cpe-Chr4:11795729 2.80E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49054 PF00072 Response_reg 6.10E-17 CL0304 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01049 K12127 - csv:101220107 950.273