Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01079 ATGGCCACTCAGCTCATTATCCTGTCGCTCATTTCCGTGGCACTCCTGGCCGCCGTTTCCCACACGGAAGCCCGCGCCATGAACATGAATGCCATCGACCGATGCTGGCGACCGAACCCATACTGGAGAAAAAACAGGCAAAAGCTCGCCCTTTGTTCAATTGGGTTTGTAGGAAAAATGACCAACAACATAGGAAGAAACCTCGTACACTACCAAGTCACGGACCCCAGCGACGACCCACTAACCCCACGCCCAGGCACCCTCAGATACGGCGCCACAATGATCAAACCCAAAGTGTGGATCACGTTTCAAAAAGACATGCACATTGTGCTTAACAAGCCGCTTCTTATTAGCAGCTACACGGCCATCGACGGCCGTGGCGCCACCGTCCACATCACGGGGAATGCGTGTCTGATGGTGTCTAGAGCCACCAATGTCATAATCCATGGGCTTATTATCCACCATTGCAAGGCCCAGGCGGCTGGCCGTGTAATGGGGCCGGGTTCGAAGATCGTTTCGTTGGGACACGTGGACGGTGATGCCATTCGTTTGGTTAGTGCTTCTAAGATTTGGATTGACCATAACACGCTGTATCGGTGTGAGGATGGGCTGATTGATGTCACTAGAGGCTCTACGGATATCACCATTTCTAACAATTGGTTGAGAGATCAAGATAAGGTTATACTTTTGGGTCACGACGATGATTATTTTCGGGACCGAAACATGAAGATCATATGGAGCACAGGCAAAGTAGAGAACGCCAAGTGGAAGTTCCATTCAGTAAGAGACGTTTTTGAAAACGGCGCTTCCTTCGCACAGATCGGCGCTGGCCGAGGCGGTGTCAAGCCAAATTACAATGCCCTGCAGCGCTTCCCAGTGGTAGACGCCAAGTGGTTGCGGTCATTGACAAGCTCTTCCGGCGCCCTGCGCTGCTCACCACGCTCAAGGTGTTGA 954 52.1 MATQLIILSLISVALLAAVSHTEARAMNMNAIDRCWRPNPYWRKNRQKLALCSIGFVGKMTNNIGRNLVHYQVTDPSDDPLTPRPGTLRYGATMIKPKVWITFQKDMHIVLNKPLLISSYTAIDGRGATVHITGNACLMVSRATNVIIHGLIIHHCKAQAAGRVMGPGSKIVSLGHVDGDAIRLVSASKIWIDHNTLYRCEDGLIDVTRGSTDITISNNWLRDQDKVILLGHDDDYFRDRNMKIIWSTGKVENAKWKFHSVRDVFENGASFAQIGAGRGGVKPNYNALQRFPVVDAKWLRSLTSSSGALRCSPRSRC 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9910324 9912284 - Cp4.1LG02g10060.1 Cpe02g01079 465028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01079 317 Gene3D - 29 248 IPR012334 -
Cpe02g01079 317 PANTHER PECTATE LYASE 18-RELATED 244 314 IPR045032 GO:0030570
Cpe02g01079 317 Pfam Pectate lyase 118 235 IPR002022 -
Cpe02g01079 317 PANTHER PECTATE LYASE 18-RELATED 11 244 IPR045032 GO:0030570
Cpe02g01079 317 SUPERFAMILY Pectin lyase-like 29 247 IPR011050 -
Cpe02g01079 317 PANTHER PECTATE LYASE 11 244 - -
Cpe02g01079 317 PANTHER PECTATE LYASE 244 314 - -
Cpe02g01079 317 SMART amb_all 106 286 IPR002022 -
Cpe02g01079 317 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
Cpe02g01079 317 PRINTS Pollen allergen Amb family signature 77 102 IPR018082 -
Cpe02g01079 317 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01079 Cpe-Chr2:9910324 Cpe15g00122 Cpe-Chr15:968547 6.16E-65 dispersed
Cpe02g01079 Cpe-Chr2:9910324 Cpe20g00041 Cpe-Chr20:184730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01079 K01728 - csv:101217103 406.757