Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01080 ATGGGGAGGAAGAAGAGAACTGAAGGTGGTGGTGAGAGATCAGAGTCTCAGGACGTTGGTGGCCGTGGCTCCCAAGGATTTGCTGAAAGGAGAGACTTCCCGCAGCAACATAGTGGCAATGCATACCAGGGTGGGGGGAGAGGCTGGGCTTCTCAAGGGGGACGTGGAGGTCAAGGTGGTGGTCGTGGCCGAGGGACGTCTCAACATCAGCACTATGGAGGACCTCCTGAATACCAAGGAAGGGGTAGAGGTGGGCAATATCAGCATGGAGGACGCAGTAACTATGGTGGTGGTAATCGCGGTGGCATGGGTAGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGCCCATCCAGGCCATCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCAATCTCATCTGTGGCGAGTTCTTCCTCCCACCCACCTGATACCTCATTGTTAGAACAACAATTTCAGCAGATTTCCATTCAGCAGGAATCTGCTCAAAGCCAAGCAATTCAACCTGCACCCCCGTCTAGTAAATCTATGAGATTCCCTCTGAGACCAGGAAAGGGTAGCACTGGCACAAGGTGTATTGTCAAGGCTAACCACTTCTTTGCGGAGCTTCCAGATAAAGATCTTCATCAGTATGATGTTACTATTACGCCAGAAGTCACTTCGCGTGTCTATAGCCGAGCTGTAATGGAGCAGCTGGTGAAGTTATACAAGGTCTCTCACCTTGGAGATCGTCTTCCTGCCTATGATGGAAGAAAAAGTTTATACACTGCCGGTCCTCTTCCTTTCATATCAAATGAGTTTAGAATAACTCTTTTTGACGAGGAAGATGGATCAGGAGGACAAAGGCGGGAGAAAGAATTTAAAGTCGTAATCAAATTTGCTGCTCGTGCTGATCTACACCATTTAGGACTCTTTCTTCAAGGCAGACAGGCTGATGCCCCTCAGGAAGCCCTTCAAGTTCTGGATATTGTTTTACGCGAATTGCCTACTTCAAGGCATGACTATTACTCTACACCTTTGTCACTGGATATTTGGTATTCCCCTGTGGGCCGATCATTTTACTCTCCAAACCTTGGTAGACGTCAGACACTGGGTGAGGGGCTGGAAAGCTGGCGTGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGGCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTTATCGACTTTGTGACTCAGCTTCTCAACCGCGATATGTCATCCAGACCACTTTCTGATGCTGACCGTGTTAAGATAAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGGTTGACATCACAAGCAACGCGGGAGCTAACTTTCCCGGTTGATGAAAGAGGTACTATGAAATCGGTGGTGGAGTACTTTTATGAAACGTATGGGTTTGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTACCGATGGAAGTATGTAAGATTGTTGAAGGACAGAGGTATTCCAAACGGCTCAACGAGAGACAGATAACTGCTCTGCTCAAGGTTACATGCCAACGACCACACGATAGAGAGGCTGACATAATGCAGACAGTACGTCATAATGCATATCATAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCTCCACCATGGCTAAAATATCATGACACAGGCAGAGAAAAAAATTGTTTGCCACAAGTTGGACAGTGGAACATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGTGTAAATTTCTCTCGCTCTGTGCAAGAGAGTGTCACTAGCAGGTTTTGTTATGAACTGGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCCCGTCCTGATCACGTGGAAAAGGCCCTTAAAACTCGGTATCATGATGCAATGAGCATTCTCCGACCCCAGGGCAAGGAACTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTCTATGGTGATTTAAAACGTATCTGTGAAACAGATCTTGGGCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTTAAAATGAGTAAACAATATTTGGCCAACGTGGCCTTAAAAATAAATGTTAAGGTTGGGGGAAGGAATACAGTACTCGTTGATGCATTATCTAGGAACATACCCTTGGTTAGTGACCGGCCGACCATTATATTTGGTGCTGACGTAACCCATCCTCACCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTGAGGGGGACAGTGACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGCATCATATTCTACCGGGATGGTGTTAGTGAAGGACAATTCTACCAAGTTTTGTTACATGAGCTGGATGCCATTAGAAAGGCTTGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACTTTCGTCGTGGTGCAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATGCAGTCGACAAGAGTACGGTTGTTGACTCCAAAATTTGTCATCCTACGGAATTTGACTTCTACCTGTGCAGCCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAAAATAAGTTCACAGCTGACGGATTGCAGACTCTAACGAATAACCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCCATTGTTCCCCCAGCGTACTATGCTCATCTCGCTGCATTCCGAGCTCGCTTTTATATGGAACCTGAAACCTCTGATATTGGATCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGCGTTAGTGGCGCTCGCAGTACACGGTCTCCAAGTATGAATGCTGCTGTTCGACCTTTGCCAGCTCTCAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3198 46.31 MGRKKRTEGGGERSESQDVGGRGSQGFAERRDFPQQHSGNAYQGGGRGWASQGGRGGQGGGRGRGTSQHQHYGGPPEYQGRGRGGQYQHGGRSNYGGGNRGGMGSGGIGGGPSSGGPSRPSVPELHQATPVYQGGVTQPISSVASSSSHPPDTSLLEQQFQQISIQQESAQSQAIQPAPPSSKSMRFPLRPGKGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYSRAVMEQLVKLYKVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRHDYYSTPLSLDIWYSPVGRSFYSPNLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDMSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHDREADIMQTVRHNAYHNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGREKNCLPQVGQWNMMNKKMFNGGTVNNWMCVNFSRSVQESVTSRFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILRPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRNIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDIGSISSDAAAGRGGVSGARSTRSPSMNAAVRPLPALKENVKRVMFYC 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9916388 9923990 + Cp4.1LG02g10120.1 Cpe02g01080 465029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01080 1065 SMART Piwi_a_2 698 1013 IPR003165 GO:0003676
Cpe02g01080 1065 MobiDBLite consensus disorder prediction 164 180 - -
Cpe02g01080 1065 SMART PAZ_2_a_3 412 544 IPR003100 GO:0005515
Cpe02g01080 1065 MobiDBLite consensus disorder prediction 164 195 - -
Cpe02g01080 1065 SUPERFAMILY PAZ domain 402 562 IPR036085 GO:0005515
Cpe02g01080 1065 Pfam PAZ domain 413 537 IPR003100 GO:0005515
Cpe02g01080 1065 Pfam Argonaute linker 2 domain 548 594 IPR032472 -
Cpe02g01080 1065 Gene3D - 586 761 - -
Cpe02g01080 1065 ProSiteProfiles PAZ domain profile. 408 522 IPR003100 GO:0005515
Cpe02g01080 1065 Pfam Argonaute linker 1 domain 356 406 IPR014811 -
Cpe02g01080 1065 ProSiteProfiles Piwi domain profile. 698 1013 IPR003165 GO:0003676
Cpe02g01080 1065 MobiDBLite consensus disorder prediction 1 125 - -
Cpe02g01080 1065 Pfam N-terminal domain of argonaute 199 333 IPR032474 -
Cpe02g01080 1065 MobiDBLite consensus disorder prediction 1 15 - -
Cpe02g01080 1065 Pfam Mid domain of argonaute 605 679 IPR032473 -
Cpe02g01080 1065 PANTHER PROTEIN ARGONAUTE 1A 87 1064 - -
Cpe02g01080 1065 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 87 1064 - -
Cpe02g01080 1065 Pfam Piwi domain 699 1012 IPR003165 GO:0003676
Cpe02g01080 1065 Pfam Glycine-rich region of argonaut 73 180 IPR024357 -
Cpe02g01080 1065 CDD PAZ_argonaute_like 407 521 - -
Cpe02g01080 1065 CDD Piwi_ago-like 566 1012 IPR045246 -
Cpe02g01080 1065 MobiDBLite consensus disorder prediction 1022 1044 - -
Cpe02g01080 1065 SMART DUF1785_2 355 407 IPR014811 -
Cpe02g01080 1065 Gene3D - 767 1065 IPR036397 GO:0003676
Cpe02g01080 1065 Gene3D paz domain 401 526 - -
Cpe02g01080 1065 SUPERFAMILY Ribonuclease H-like 693 1013 IPR012337 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01488 Cpe-Chr1:8885268 Cpe02g01080 Cpe-Chr2:9916388 0 dispersed
Cpe02g01080 Cpe-Chr2:9916388 Cpe03g01473 Cpe-Chr3:11678135 0 dispersed
Cpe02g01080 Cpe-Chr2:9916388 Cpe20g00042 Cpe-Chr20:188486 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01080 K11593 - csv:101212130 1812.73