Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01099 ATGATAGCCAGCGCCACCACTTCATCCGACCCTTTTTCTTCCTTGGAAAATGGCACCAAGAGAAAGCGAAGGCCTGCAGGGACACCAGATCCGGACGCAGAGGTTGTGTCTCTGTCGCCCAAGACGTTGCTCGAATCGGACCGATACGTGTGCGAGATCTGCAACCAGGGGTTCCAGCGGGACCAGAACCTCCAGATGCATAGGCGCCGCCATAAGGTGCCATGGAAGCTGTTGAAGAGGGAGAGTCCTGTTGTGAGGAAGAGGGTTTTTGTTTGTCCTGAGCCTACCTGCCTGCACCATGACCCTTGTCATGCGCTTGGTGACCTTGTTGGTATCAAGAAGCACTTCCGACGGAAGCATAGCAACCATAAGCAATGGGTTTGTCAAAAATGCTCCAAGGGCTATGCTGTTCAGTCTGATTATAAAGCTCATCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCATCAAGATGCTTGCAATATGGGACATCTCCAGCAGCAATCCCAAACCCTCCAGCCGGCTGCATGTTTGTCCCAAACGGCATCGAGTCCAAGCCCATCCAGCGACACCAACATCAGCAGCGCACCCAATTGGGCAGCTCTCATAGCGCCACCCATTTCAAAGCCTCCGGACGCCAACAACAATGGATCACCACACGATCACAATCTAGACCTCAAACTCTCAACTGGGTCGAATTCGAATCCGAATCCGAATCTGAATCCGAATCTTGTAGAGGGAAACAAAGGCTGTTCTTCAATCAAACTCCAGCTCTCGATTGGATCGTGCGAGTTCATGGACGGTGCAAGAGATGTTAGAGACGAAGCCGGGCAGACACTAAGAGTTGCATTGGCGGAGAAGGCGTACGCGGAGGAAGCTAGACAGCAAGCCAAGCGGCAAGTAGAAATAGCGGAGCAAGAATTCGCAAATGCCAAAAGAATGAGACAACAAGCACAAGCGGAGCTCGATAAAGCTATAACGCTTAAACAAACCGTAATCAAACGGGTCAATTCAACTATTCTTGAAATCACTTGTCAAGCTTGCCAGAAGCAATTTCAAGCGAAAACAACAACAACTACAACAACAACAGCTGCATCGACTACTACTACAACAACGGCATCGTGCCGATCGTGA 1176 50.34 MIASATTSSDPFSSLENGTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCQKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLQQQSQTLQPAACLSQTASSPSPSSDTNISSAPNWAALIAPPISKPPDANNNGSPHDHNLDLKLSTGSNSNPNPNLNPNLVEGNKGCSSIKLQLSIGSCEFMDGARDVRDEAGQTLRVALAEKAYAEEARQQAKRQVEIAEQEFANAKRMRQQAQAELDKAITLKQTVIKRVNSTILEITCQACQKQFQAKTTTTTTTTAASTTTTTTASCRS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10053745 10056319 + Cp4.1LG02g09930.1 Cpe02g01099 465048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01099 391 SMART c2h2final6 126 153 IPR013087 -
Cpe02g01099 391 SMART c2h2final6 90 120 IPR013087 -
Cpe02g01099 391 SMART c2h2final6 49 71 IPR013087 -
Cpe02g01099 391 MobiDBLite consensus disorder prediction 190 209 - -
Cpe02g01099 391 MobiDBLite consensus disorder prediction 1 15 - -
Cpe02g01099 391 MobiDBLite consensus disorder prediction 217 260 - -
Cpe02g01099 391 SUPERFAMILY beta-beta-alpha zinc fingers 46 72 IPR036236 -
Cpe02g01099 391 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Cpe02g01099 391 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 387 - -
Cpe02g01099 391 MobiDBLite consensus disorder prediction 225 260 - -
Cpe02g01099 391 Coils Coil 294 342 - -
Cpe02g01099 391 Gene3D Classic Zinc Finger 27 89 - -
Cpe02g01099 391 MobiDBLite consensus disorder prediction 1 36 - -
Cpe02g01099 391 PANTHER OS03G0310200 PROTEIN 1 387 IPR039288 GO:0009630
Cpe02g01099 391 Gene3D Classic Zinc Finger 111 190 - -
Cpe02g01099 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 71 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01865 Cpe-Chr1:15978666 Cpe02g01099 Cpe-Chr2:10053745 4.82E-136 dispersed
Cpe02g01099 Cpe-Chr2:10053745 Cpe20g00169 Cpe-Chr20:959200 4.27E-159 dispersed
Cpe02g01099 Cpe-Chr2:10053745 Cpe20g00005 Cpe-Chr20:40531 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49063 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01099 K25871 - csv:101209426 557.755