Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01172 ATGTCGTCTATTCAAGCTACCATAACACCTGCTGTTGGAAAGAGTGGGAACCGTTCCTACTCTACGAAATTGCTTAAGTCTGCCTTCTTTCCTGGGTTTGATGTGGTTGGTCGTGTTTCCGGTGCATGCAAGGAATTACACCCTTCATCTATTACCTTAGCACCTAGAGCCACTTTAACCTTTGACCCCCCAGAAACCAGCACGGAGAAGGCCAAAAACAAGAAACATACAGTTGATCCTTCTTCTCCTGATTTTTTGCCGCTTCCTTCATTTGAGCTGTGTTTTCCAAAAAGCACAAAAGAACACAAGGAAATTGTTCACGAAGAAACTGGGCACGTGCTCAAAGTACCCTTTCGACGGGTTCATTTATCTGGTGATGAACCACACTTTGACAATTATGACACTAGTGGTCCTCAAAACATTAGCCCCCGTGTTGGATTGCCTAAACTTCGGAAGGACTGGGTTGATAGGAGAGAAAAATTAGGAGCACCAAGATGCACACAGATGTATTATGCCAAGCAAGGAATCATAACTGAAGAAATGTTGTTTTGTGCCACTCGTGAGAAGCTTGACCCAGAGTTTGTGAGGTCAGAGGTTGCTCGTGGGCGGGCAATCATCCCTTCCAACAAGAAGCATTTGGAATTGGAGCCCATGATTGTGGGTAGAAATTTCTTGGTCAAAGTAAATGCAAATATTGGAAACTCTGCTGTTGCGAGTTCAATTGAAGAAGAAGTTTATAAAGTCCAATGGGCGACCATGTGGGGAGCTGATACTGTCATGGACCTCTCTACTGGTCGTCACATACATGAGACTCGTGAGTGGATTTTGCGTAACTCACCAGTACCATTAGGAACTGTACCCATATATCAGGCACTTGAGAAAGTGAATGGAATAGCTGAAAATCTCACCTGGGATATTTTCAGAGAAACACTGATTGAACAAGCTGAGCAGGGTGTAGACTATTTCACTATTCATGCTGGGGTCTTACTGCGATACATCCCTCTAACAGCCAAAAGAATGACGGGAATCGTATCACGTGGAGGATCTATTCATGCAAAGTGGTGTTTGGCTCATCATAAGGAAAACTTTGCTTATGAACACTGGGATGACATACTTGACATCTGTAATCAGTATGATATATCCCTATCGATTGGTGATGGGCTGAGACCTGGTTCAATTTATGATGCTAATGACACTGCTCAATTTGCGGAGCTCTTAACTCAGGGTGAACTGACTCGTAGAGCATGGGAAAAAGATGTGCAGGTAATGAATGAAGGACCAGGACATGTTCCAATGCATAAGATCCCTGAAAATATGCAAAAACAGCTTGAGTGGTGTAATGAAGCACCTTTTTACACTCTCGGCCCCTTGACTACGGATGTTGCTCCTGGATATGACCACATTACCTCTGCCATTGGTGCAGCCAATATTGGGGCCCTTGGCACGGCTCTTCTCTGTTACGTGACACCGAAAGAGCACTTAGGATTGCCGAATCGAGATGACGTGAAGACTGGAGTAATATCATATAAGATAGCTGCTCATGCAGCTGATCTAGCCAAAGGTCACCCACATGCACAATCATGGGATGATGCACTGAGTAAGGCAAGATTCGAATTTCGGTGGATGGATCAATTTGCTTTGTCAATGGACCCTATGACTGCCATGTCCTTTCATGATGAAACCTTGCCATCAGAAGGTGCCAAGGTAGCCCATTTCTGCTCCATGTGTGGACCCAAGTTCTGCTCCATGAAGATAACTGAAGATGTGCGGAAGTATGCCGAGGAACACGGGTACGGGAACGTAGAAGAAGCTCTGCAGCAAGGGATGGATGCTATGAGTGCTGAATTTTTGTCTGCAAAGAAAACCATTAGTGGTGAACAACATGGTGAAACTGGTGGGGAAATCTACTTGCCTGCAAGCTACGTGGACTCCATGAAAAGCCTGCAAGAGACGGGTAATGCTTTTTATTTCTTGGGTCTTAGCATACAGTCCAATGGACCGCTAGGGAAGGAGAAAGGGTTTGAAGTGCAGGAGACTTGTTTGAGCGGACAGATAATTTATGCCTGCTGCTTGAGTTTCCTAATTCTGGCCATGGAAGAGAAAAACGTCGCTACACTGCTCGTGGCTGTCGTTATGGTCGACGATCTATTTGAGCATGCATCATTCGAACCTGACCAAAACAATGAGGCAACTGAAGACAGTAAATTCTCCATCTTCCTTTTACCAAAATATTTTCAAGCTACAGTAAATTCTCCATCTTCCTTTTACCAAAATATTTTCAAGCTCCTCATAACTGGAAAATGA 2304 44.36 MSSIQATITPAVGKSGNRSYSTKLLKSAFFPGFDVVGRVSGACKELHPSSITLAPRATLTFDPPETSTEKAKNKKHTVDPSSPDFLPLPSFELCFPKSTKEHKEIVHEETGHVLKVPFRRVHLSGDEPHFDNYDTSGPQNISPRVGLPKLRKDWVDRREKLGAPRCTQMYYAKQGIITEEMLFCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSPVPLGTVPIYQALEKVNGIAENLTWDIFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAHHKENFAYEHWDDILDICNQYDISLSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDVAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVISYKIAAHAADLAKGHPHAQSWDDALSKARFEFRWMDQFALSMDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGNVEEALQQGMDAMSAEFLSAKKTISGEQHGETGGEIYLPASYVDSMKSLQETGNAFYFLGLSIQSNGPLGKEKGFEVQETCLSGQIIYACCLSFLILAMEEKNVATLLVAVVMVDDLFEHASFEPDQNNEATEDSKFSIFLLPKYFQATVNSPSSFYQNIFKLLITGK 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10664374 10669647 + Cp4.1LG02g11710.1 Cpe02g01172 465121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01172 767 MobiDBLite consensus disorder prediction 60 81 - -
Cpe02g01172 767 SFLD phosphomethylpyrimidine synthase (ThiC) 165 621 - -
Cpe02g01172 767 Hamap Phosphomethylpyrimidine synthase [thiC]. 166 592 IPR037509 GO:0009228|GO:0016830
Cpe02g01172 767 Pfam Radical SAM ThiC family 167 587 IPR002817 GO:0009228|GO:0051536
Cpe02g01172 767 Gene3D Radical SAM ThiC family, central domain 209 523 IPR038521 -
Cpe02g01172 767 PANTHER - 1 646 - -
Cpe02g01172 767 SFLD phosphomethylpyrimidine synthase (ThiC) 167 587 IPR002817 GO:0009228|GO:0051536
Cpe02g01172 767 Gene3D - 527 559 - -
Cpe02g01172 767 TIGRFAM thiC: phosphomethylpyrimidine synthase 167 590 IPR002817 GO:0009228|GO:0051536
Cpe02g01172 767 PANTHER THIAMINE BIOSYNTHESIS PROTEIN THIC 1 646 IPR002817 GO:0009228|GO:0051536
Cpe02g01172 767 SFLD Radical SAM Phosphomethylpyrimidine Synthase 165 623 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01172 Cpe20g00858 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01172 Cpe-Chr2:10664374 Cpe20g00858 Cpe-Chr20:7734937 6.84E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01172 K03147 - csv:101213554 1259.59