Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01178 ATGGCAGTTGGAGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTGATATTAGCAATGTTAGCTTTACACCAAAACAAAATCCACATCTTGAAATTCTCCCTTTTGGGTTCCATTCTTTCCAATTTACTTCTAGTTCTTGGCACATCTCTTCTCTTTGGAGGCTTATCCAATCTCAACAAGCAACAAACATTCAACCCAAAAGTCGCGAACGTAAGCTCTTTAGTGTTGCTACTCGGATTGCTATGCCAAATGCTGCCATTGATATCAAGATTTGCATCACCATCAGCTAAATTATGGACAGATTTGTCTGTTCTAGAGCTATCAAGAACTTGCAGCATCATAATGCTCATAGCTTATCTTGTTTATGTGTTCTTCCAATTGAAAACCCATAACCAATTTTTTGGTCTACCAGAGGAGGAAGAGGATGATGAAGAAATGGCAATAATTGGGGTTTGGAGCTCGTTTGGTTGGCTGGTGGGTATGACCATTGTCATAGCTGTTCTATCACAGTATGTTGTGGCTACAATTGAGGATATAACACTTGGGATAGCATTGGGATCAGCAGCTCAAATTTCACTGTTTGCGGTGCCTTTGAGTGTAGCTGTTGGATGGTGTTCGGGCATCAAAATGGATCTTGATTTCGGTCTCATCGAAACCGCGTCTCTCGCCTTCGCCATCGTCCTCACTCTATTCACTCTACAG 708 42.09 MAVGGLVNATCGNATELILAMLALHQNKIHILKFSLLGSILSNLLLVLGTSLLFGGLSNLNKQQTFNPKVANVSSLVLLLGLLCQMLPLISRFASPSAKLWTDLSVLELSRTCSIIMLIAYLVYVFFQLKTHNQFFGLPEEEEDDEEMAIIGVWSSFGWLVGMTIVIAVLSQYVVATIEDITLGIALGSAAQISLFAVPLSVAVGWCSGIKMDLDFGLIETASLAFAIVLTLFTLQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10703036 10707393 - Cp4.1LG02g11780.1 Cpe02g01178 465127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01178 236 PANTHER VACUOLAR CATION/PROTON EXCHANGER 180 236 - -
Cpe02g01178 236 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 179 - -
Cpe02g01178 236 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 180 236 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cpe02g01178 236 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 2 179 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cpe02g01178 236 Pfam Sodium/calcium exchanger protein 3 129 IPR004837 GO:0016021|GO:0055085
Cpe02g01178 236 Gene3D - 1 236 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01178 Cpe-Chr2:10703036 Cpe08g01222 Cpe-Chr8:8906933 1.91E-55 dispersed
Cpe02g01178 Cpe-Chr2:10703036 Cpe19g00283 Cpe-Chr19:2455207 1.14E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01178 K07300 - csv:105436053 301.212