Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01228 ATGCCCACTTCCCACTCTCTCACTCTCACTTTCTCTTCTCTTTTCAGTTATTGCTTTCAACCAAAAAAAATGGCTACAACGGCGATTCTCCTCTGTATTGCATCTCTTATCTCTACAATGTGGTCGGCTACTGCGAGAATCCCCGGCGTCTACTCCGGCGGTCCTTGGGAGAGTGCTCACGCCACCTTCTACGGCGGCTCCGACGCCTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGTTGAGCACAGCGCTATTCAATAATGGGCTGAGCTGTGGTGCCTGTTTCGAGATTAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGCAGCCCTTCGATTATGATTACGGCCACGAACTTCTGCCCGCCTAATTTTGCTCTGCCCAGTGACAATGGCGGTTGGTGTAACCCTCCTCGGCCACATTTCGATTTGGCGATGCCTATGTTCCTTAAAATCGCCGAGTACCGCGCTGGTATCGTCCCCGTCGCCTACCGCCGAGGAAGAAGGAAGCAAGAAGGCTGGGGAGGC 570 54.56 MPTSHSLTLTFSSLFSYCFQPKKMATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEGWGG 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11088874 11090111 + Cp4.1LG02g13490.1 Cpe02g01228 465177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01228 190 PRINTS Expansin/Lol pI family signature 95 113 IPR007118 GO:0005576
Cpe02g01228 190 PRINTS Expansin/Lol pI family signature 171 187 IPR007118 GO:0005576
Cpe02g01228 190 PRINTS Expansin/Lol pI family signature 55 70 IPR007118 GO:0005576
Cpe02g01228 190 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Cpe02g01228 190 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 74 188 IPR007112 -
Cpe02g01228 190 SMART dpbb_1 91 178 IPR007112 -
Cpe02g01228 190 Gene3D - 42 181 IPR036908 -
Cpe02g01228 190 PANTHER EXPANSIN 27 187 - -
Cpe02g01228 190 SUPERFAMILY Barwin-like endoglucanases 55 180 IPR036908 -
Cpe02g01228 190 PANTHER EXPANSIN-A15 27 187 IPR002963 GO:0009664
Cpe02g01228 190 PRINTS Expansin signature 113 124 IPR002963 GO:0009664
Cpe02g01228 190 PRINTS Expansin signature 127 137 IPR002963 GO:0009664
Cpe02g01228 190 PRINTS Expansin signature 86 100 IPR002963 GO:0009664
Cpe02g01228 190 PRINTS Expansin signature 163 176 IPR002963 GO:0009664
Cpe02g01228 190 PRINTS Expansin signature 146 163 IPR002963 GO:0009664
Cpe02g01228 190 Pfam Lytic transglycolase 91 178 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01088 Cpe-Chr1:6418949 Cpe02g01228 Cpe-Chr2:11088874 2.98E-70 dispersed
Cpe01g02305 Cpe-Chr1:19451816 Cpe02g01228 Cpe-Chr2:11088874 1.14E-88 dispersed
Cpe02g01228 Cpe-Chr2:11088874 Cpe01g01474 Cpe-Chr1:8805796 1.70E-72 dispersed
Cpe01g00178 Cpe-Chr1:1002796 Cpe02g01228 Cpe-Chr2:11088874 9.45E-98 wgd
Cpe01g00990 Cpe-Chr1:5865470 Cpe02g01228 Cpe-Chr2:11088874 7.85E-70 wgd
Cpe10g00890 Cpe-Chr10:5008797 Cpe02g01228 Cpe-Chr2:11088874 4.12E-95 wgd
Cpe16g00619 Cpe-Chr16:6736333 Cpe02g01228 Cpe-Chr2:11088874 5.79E-98 wgd
Cpe19g00348 Cpe-Chr19:3058720 Cpe02g01228 Cpe-Chr2:11088874 7.10E-97 wgd
Cpe02g01228 Cpe-Chr2:11088874 Cpe20g00823 Cpe-Chr20:7443824 2.38E-110 wgd
Cpe02g01228 Cpe-Chr2:11088874 Cpe05g00925 Cpe-Chr5:6080077 4.17E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01228 - - csv:101206662 330.872