Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01239 ATGGAGGAAGATAACGGCGCTCTGATTCAGAGCTTGATCGATGTTGTGAACGAGATTGCGTGGATCTCGGATTTTAGGCTTACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATACCAAGGAGCCAGTCTCTGAGGATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCCAGGGGAGCAAGATTTTTCTGGCCGTAGAGAGGGAGCAAATTATGGTCAAATTTCATGAGGTAACGGCTCAGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGATGAAGTTAAGGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGCCGATGCACCTGACTCTGAGCTGATGGATGATATCTTTGCCCTTTACAACACAAGCAATGATTCTTCTGTGGATCAAAACCGCCTCCGGAGATTAGCTGAAAAATTACAATTAATTGGAATATCCGACCTTACACAAGAGTCCTTAGCTTTGCATGAGATGGTTACTGCTAATGGAGGTGATCCAGGTGAGAGCATTGAGACGATGTCAGGGTTGCTGAAGAAAATAAAAGATTTTGTACAAACGGAGAACCTTGAAACGGATACTCCTGGCAGAGACAAGAGTCCTCCTGCTAGTTGTAGTGGACAAATTTCAAATGAGAAAAATAATACGGCCCCAATTATACCAGAAGATTTTCGCTGTCCCATATCCCTGGAGTTGATGAGAGATCCTGTTATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGTTTGAAGCAGGGCACGGAACATGTCCAAAGACACAACAGAATCTTTCAAGCACTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATTGAACCACCAAAACGACCCAGCAGTGATCGACCATGTAGAAGCTCATCATCTTGCTCGGCTGCTGAACGCACGAAGATTGATATTCTGCTCTGCAAACTTGCATCTGGAAATCCTGAAGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCGAAGCGGAATGCAGATAATCGTGTTGCAATTGCTGAGGCTGGTGCAATACCTCTTCTTGTTGGCCTTCTTTCAACTCCGGATTCTCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTTTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTGCTCGTGCTCAAGAAAGGGAGCATGGAAGCCCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAGAATAAAGTTAGAATTGGTGCCTCTGGAGCTATCCCGCCGCTTGTTACGCTGCTTAGCCAAGGCACTCAAAGAGGCAAGAAAGATGCCGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTCACCGAACCTGGATCCGGAATGGTGGACGAAGCCTTAGCCATCTTGGCAATACTCTCTAGCCATTCCGAAGGGAAAGCAGTGATCGGATCTGCAAAGGCGGTGCCAGTTTTGGTAGATGTTATAGGGACAGGATCCCCCAGGAACAGAGAGAATGCAGCTGCTGTTCTCTTGCATCTCTGCTCTGGAGATGAACAACACCTATTAGAGGCCAGGGAGCTTGGAGTGATGAGTTCATTGATAGATTTGGCACAAAATGGCACGGATAGAGGCAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTCTTAGAGCACACGGAGGAGACTCGGGTGCAACCACCAGAGTCTCGACCTCAAAACCAGCCATCCCTATCCAACTCTACGACGGAAGTCGCTGGTAGCTGA 1995 47.17 MEEDNGALIQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDTKEPVSEDTLKALVLLKEALESAKKLLRFGSQGSKIFLAVEREQIMVKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELMDDIFALYNTSNDSSVDQNRLRRLAEKLQLIGISDLTQESLALHEMVTANGGDPGESIETMSGLLKKIKDFVQTENLETDTPGRDKSPPASCSGQISNEKNNTAPIIPEDFRCPISLELMRDPVIVSTGQTYERSCIEKWFEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSDRPCRSSSSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSQGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGSGMVDEALAILAILSSHSEGKAVIGSAKAVPVLVDVIGTGSPRNRENAAAVLLHLCSGDEQHLLEARELGVMSSLIDLAQNGTDRGKRKAAQLLERMNRLLEHTEETRVQPPESRPQNQPSLSNSTTEVAGS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11139117 11143992 + Cp4.1LG02g13430.1 Cpe02g01239 465188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01239 664 CDD RING-Ubox_PUB 262 304 IPR045210 -
Cpe02g01239 664 Gene3D - 498 642 IPR011989 -
Cpe02g01239 664 SUPERFAMILY ARM repeat 356 629 IPR016024 -
Cpe02g01239 664 MobiDBLite consensus disorder prediction 643 664 - -
Cpe02g01239 664 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 644 - -
Cpe02g01239 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Cpe02g01239 664 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Cpe02g01239 664 Gene3D - 341 492 IPR011989 -
Cpe02g01239 664 SUPERFAMILY RING/U-box 247 334 - -
Cpe02g01239 664 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Cpe02g01239 664 Gene3D - 7 117 IPR036537 GO:0007166
Cpe02g01239 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Cpe02g01239 664 MobiDBLite consensus disorder prediction 237 254 - -
Cpe02g01239 664 PANTHER U BOX DOMAIN-CONTAINING 6 644 - -
Cpe02g01239 664 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Cpe02g01239 664 Coils Coil 619 639 - -
Cpe02g01239 664 MobiDBLite consensus disorder prediction 635 664 - -
Cpe02g01239 664 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Cpe02g01239 664 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Cpe02g01239 664 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515
Cpe02g01239 664 MobiDBLite consensus disorder prediction 228 254 - -
Cpe02g01239 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 331 IPR013083 -
Cpe02g01239 664 SMART arm_5 508 548 IPR000225 GO:0005515
Cpe02g01239 664 SMART arm_5 426 466 IPR000225 GO:0005515
Cpe02g01239 664 SMART arm_5 591 631 IPR000225 GO:0005515
Cpe02g01239 664 SMART arm_5 549 589 IPR000225 GO:0005515
Cpe02g01239 664 SMART arm_5 467 507 IPR000225 GO:0005515
Cpe02g01239 664 SMART arm_5 385 425 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00910 Cpe-Chr1:5374541 Cpe02g01239 Cpe-Chr2:11139117 1.70E-164 dispersed
Cpe01g01250 Cpe-Chr1:7485832 Cpe02g01239 Cpe-Chr2:11139117 0 dispersed
Cpe02g01239 Cpe-Chr2:11139117 Cpe09g00408 Cpe-Chr9:2564268 0 dispersed
Cpe05g00133 Cpe-Chr5:680661 Cpe02g01239 Cpe-Chr2:11139117 7.83E-90 dispersed
Cpe07g00104 Cpe-Chr7:539617 Cpe02g01239 Cpe-Chr2:11139117 6.07E-30 dispersed
Cpe10g00809 Cpe-Chr10:4588548 Cpe02g01239 Cpe-Chr2:11139117 3.60E-59 dispersed
Cpe11g00782 Cpe-Chr11:6327751 Cpe02g01239 Cpe-Chr2:11139117 1.69E-19 dispersed
Cpe14g00527 Cpe-Chr14:3329480 Cpe02g01239 Cpe-Chr2:11139117 8.43E-30 dispersed
Cpe15g00150 Cpe-Chr15:1241927 Cpe02g01239 Cpe-Chr2:11139117 6.96E-92 dispersed
Cpe18g00826 Cpe-Chr18:7657630 Cpe02g01239 Cpe-Chr2:11139117 3.22E-14 dispersed
Cpe19g00982 Cpe-Chr19:6908528 Cpe02g01239 Cpe-Chr2:11139117 3.47E-58 dispersed
Cpe20g00479 Cpe-Chr20:2772873 Cpe02g01239 Cpe-Chr2:11139117 3.09E-98 dispersed
Cpe16g00348 Cpe-Chr16:5253031 Cpe02g01239 Cpe-Chr2:11139117 1.08E-164 transposed
Cpe16g00603 Cpe-Chr16:6674165 Cpe02g01239 Cpe-Chr2:11139117 0 wgd
Cpe02g01239 Cpe-Chr2:11139117 Cpe20g00814 Cpe-Chr20:7385804 0 wgd
Cpe02g01239 Cpe-Chr2:11139117 Cpe05g00914 Cpe-Chr5:6010481 1.22E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01239 - - csv:101218572 1094.72