Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01240 ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATCATCATCATCATCATCTTCAGATACCCAATAATGGATCTCCTCACCATCTGCAACCCTCATCCACTGCGCTGCCCTCTCATGTCGGTGCCACCGGGGTTGCCTCGATCCGCCGTGGTTCGATGGTCGACCGAGCTCGCCTAGCTAACATACCACTACCCGAGACTGCCCTCAAATGTCCTCGATGTGATTCCTCCAACACCAAGTTCTGTTACTTCAATAACTATAGCCTCTCTCAGCCTCGCCACTTTTGCAAGACCTGTCGTCGATACTGGACTCGTGGTGGCGCTCTTCGAAACGTTCCGGTTGGAGGCGGTTGTCGTCGGAATAAAAAGAATAAAAGTAGACGCTCGAAATCTCCGGCCACCGGGAACGAAACGAGTAACAATAACAATAACAATTCGAACTCACCCACCAATACAATTCCCTTGCATAGTAGCAACGCTGAGAATATTATTGGTCAGTTGCAGCCTCAGAATCCTCATCTTTCATTCATGGCTACGTTGAACAATTTCTCTCGTTATGGGACAGCCAATTTAGGGTTGAGTTTCAATGAGATCCAAACTCAAGCTGGAGACATCGGTAACAGCGCCCTTCTAAATCATCACTGGCGCAATTCCCAAAGCTTTCCTCTTTCAGCTGACCTAGAAACGCCGACAGCGTTGTACCCATTTCAAATTAGTGAAGGCGGCAACAACGCAACAAATTCAATTCTAAATCCAAATTCAAGAGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCAAATTTGGGTGTCAACAATTCGGACAATAATAATCAATTTTGGAACGGCGGAAATGGGTGGACAGATCTTTCGGCTATCAGTTCTTCGTCAAGTGGCCATATTTCTTGTGACTTCAATCATTGA 981 45.67 MDFSSVPLYLDPPPNWHQQSNHHHHHHLQIPNNGSPHHLQPSSTALPSHVGATGVASIRRGSMVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSRRSKSPATGNETSNNNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPHLSFMATLNNFSRYGTANLGLSFNEIQTQAGDIGNSALLNHHWRNSQSFPLSADLETPTALYPFQISEGGNNATNSILNPNSRATHLPPVKIEETQVLNLLKSSNLGVNNSDNNNQFWNGGNGWTDLSAISSSSSGHISCDFNH 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11148513 11150803 + Cp4.1LG02g13420.1 Cpe02g01240 465189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01240 326 MobiDBLite consensus disorder prediction 141 166 - -
Cpe02g01240 326 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 317 IPR045174 GO:0003700|GO:0006355
Cpe02g01240 326 Pfam Dof domain, zinc finger 78 133 IPR003851 GO:0003677|GO:0006355
Cpe02g01240 326 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677|GO:0006355
Cpe02g01240 326 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677|GO:0006355
Cpe02g01240 326 MobiDBLite consensus disorder prediction 123 166 - -
Cpe02g01240 326 MobiDBLite consensus disorder prediction 33 49 - -
Cpe02g01240 326 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 22 317 - -
Cpe02g01240 326 MobiDBLite consensus disorder prediction 14 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01240 - - - csv:101218334 436.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01095 Cpe-Chr1:6475077 Cpe02g01240 Cpe-Chr2:11148513 3.78E-63 dispersed
Cpe01g02293 Cpe-Chr1:19379956 Cpe02g01240 Cpe-Chr2:11148513 6.61E-60 dispersed
Cpe02g01240 Cpe-Chr2:11148513 Cpe08g01160 Cpe-Chr8:8615889 1.62E-53 dispersed
Cpe19g00602 Cpe-Chr19:4969994 Cpe02g01240 Cpe-Chr2:11148513 2.70E-32 dispersed
Cpe01g00186 Cpe-Chr1:1055284 Cpe02g01240 Cpe-Chr2:11148513 1.12E-58 wgd
Cpe10g00881 Cpe-Chr10:4961166 Cpe02g01240 Cpe-Chr2:11148513 1.60E-46 wgd
Cpe16g00602 Cpe-Chr16:6669904 Cpe02g01240 Cpe-Chr2:11148513 1.33E-50 wgd
Cpe19g00362 Cpe-Chr19:3293086 Cpe02g01240 Cpe-Chr2:11148513 4.37E-31 wgd
Cpe02g01240 Cpe-Chr2:11148513 Cpe20g00813 Cpe-Chr20:7378828 4.16E-103 wgd
Cpe02g01240 Cpe-Chr2:11148513 Cpe05g00913 Cpe-Chr5:6006866 1.43E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 3.2e-45 178.7
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT1G29160 53.3 2.6e-39 159.1
Cpe10g00145 CCT,CST 21 158 C2C2-Dof Transcription Factor Family AT1G29160 54.9 1.1e-37 153.7
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 1.8e-45 179.5
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT2G34140 50.9 8.1e-38 154.1
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT2G37590 67.4 8.9e-41 164.9
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.4
Cpe02g01240 . 57 131 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 59.6 1.7e-36 150.6
Cpe20g00813 CST 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Cpe04g01497 CCT,CST,ECH 143 489 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.2e-83 307.8
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT5G02460 66.7 5.9e-39 159.1
Cpe20g00813 CST 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Cpe02g01240 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 61.2 8.5e-38 155.2
Cpe10g00881 CCT,CST,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 63.9 2.7e-36 150.2
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.7e-36 150.2
Cpe10g00881 CCT,CST,ECH 19 128 C2C2-Dof Transcription Factor Family AT3G55370 65.5 1.1e-36 151.4
Cpe04g01443 CCT,CST 26 313 C2C2-Dof Transcription Factor Family AT5G60850 52.3 1.4e-48 190.7
Cpe18g00719 CCT 26 318 C2C2-Dof Transcription Factor Family AT5G60850 53.7 2.0e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49073 PF02701 zf-Dof 2.50E-32 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g01240 Cpe_Chr02 FPKM 0.785404 0.782302 0.535565 0.323451 0.315341 0.491428 0.303242 0.0 0.0 0.0