Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01279 ATGGAAAACGATTACACGGCTGTGGAGATCAATGGCCTTCCCACCTACGATGGAAGGTACATCCTCTACAACGTTCTCGGCAACTTATTTGAGGTCTCCGCCAAGTACGCCCCTTCAATTCAGCCTGTTGGACGCGGTGCTTACGCCATTGTTTGGTACTTCTTTTCCTCCTCTTTCGTTTTTCGCTTTGCTTCTAAGTTCTTCGATTATATTTTGGTATATGCTAAGATTTTGATCATCTGTTTACTCGGCTGCACGACGAATTCGGAGACGAAAGATGAGGTTGCGATAAAGAAGATAGGGAATGCTTTTGATAACTGGGTTGATGCCAAGAGAACTCTTCGTGAGATTAAACTTCTATGCCATATGGACCATGAAAATATTATAAAGATCAAAGATATAATTCCTCCACCAGAAAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTGCATCAGATCATTTGCTCTAGCCAAGCTCTAACAGACGATCACTGTCAGTACTTCTTATACCAGTTACTACGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAGGCAATCTGCTTCTCAATGCAAATTGCGACCTCAAGATTTGTGATTTTGGGTTAGCAAGAACATCAGAGACGGATTTTATGACAGAATATGTTGTAACCAGATGGTATCGAGCCCCTGAGCTGCTACTTAATACCTCTGAATACACTGCTGCGATAGATATTTGNATCAGAGACGGATTTTATGACAGAATATGTTGTAACCAGATGTTGTTAGGTTCACCAGATGATTCCGATCTTGGATTTCTTAGAAGTGACAAGGCACTGAAGTATGTCAAGAAACTTCCTCATTTCCCAAGACAACCGCTGACCGAAAAGTTACCAGATCTTCCTCCACTGGCGGTTGATCTTGCAGAGAGGATGCTTCTCTTTGATCCAAGCAAGAGAATAACTGGTAACTCACCCACCTTTGCATCTGACATTACTTAA 1020 41.27 MENDYTAVEINGLPTYDGRYILYNVLGNLFEVSAKYAPSIQPVGRGAYAIVWYFFSSSFVFRFASKFFDYILVYAKILIICLLGCTTNSETKDEVAIKKIGNAFDNWVDAKRTLREIKLLCHMDHENIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIICSSQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPGNLLLNANCDLKICDFGLARTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIXIRDGFYDRICCNQMLLGSPDDSDLGFLRSDKALKYVKKLPHFPRQPLTEKLPDLPPLAVDLAERMLLFDPSKRITGNSPTFASDIT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11421450 11424177 + Cp4.1LG02g13050.1 Cpe02g01279 465228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01279 339 ProSiteProfiles Protein kinase domain profile. 37 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g01279 339 SMART serkin_6 77 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g01279 339 Gene3D Transferase(Phosphotransferase) domain 1 153 252 - -
Cpe02g01279 339 Gene3D Transferase(Phosphotransferase) domain 1 267 329 - -
Cpe02g01279 339 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 83 329 - -
Cpe02g01279 339 SUPERFAMILY Protein kinase-like (PK-like) 87 328 IPR011009 -
Cpe02g01279 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Cpe02g01279 339 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 56 - -
Cpe02g01279 339 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 15 56 - -
Cpe02g01279 339 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 83 329 - -
Cpe02g01279 339 Gene3D Phosphorylase Kinase; domain 1 61 152 - -
Cpe02g01279 339 Gene3D Phosphorylase Kinase; domain 1 14 57 - -
Cpe02g01279 339 ProSitePatterns MAP kinase signature. 104 207 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cpe02g01279 339 Pfam Protein kinase domain 87 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01279 Cpe-Chr2:11421450 Cpe20g00780 Cpe-Chr20:6989381 7.33E-169 dispersed
Cpe02g01275 Cpe-Chr2:11398202 Cpe02g01279 Cpe-Chr2:11421450 1.14E-103 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62237 PF00069 Pkinase 2.00E-47 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01279 K04371 - csv:101218403 465.692