Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01297 ATGACTGACGCAAAATCCGGTCCAACTTCAATCATCCTCCGGTCTCAGTCGCCGCCGCCGCCGCCGCCACCTTGTGTCCAGGCCGGCGTCGTCGTCACTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCTTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTGTCTTCGGTGCTAGCAATATCATCAAATTGCTTCAGGATCTTCCCGAATCACAAAGAGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGGTGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCTGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTAATTTGCAAGGAATTAACTCAAACGCCCGCACCAACACCACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCTCTGCCACTCCTCAGAGCTACCCTTTAGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGGTGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCTGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTAATTTGCAAGGAATTAACTCAAACGCCCGCACCAACACCACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCTCTGCCACTCCTCAGAGCTACCCTTTGTTTGATGATAGCAATATCTGGGAGGCTCTTTGGACATGA 870 51.15 MTDAKSGPTSIILRSQSPPPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSSATPQSYPLADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSSATPQSYPLFDDSNIWEALWT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11546733 11549696 - Cp4.1LG02g12790.1 Cpe02g01297 465246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01297 289 Pfam Lateral organ boundaries (LOB) domain 34 131 IPR004883 -
Cpe02g01297 289 Pfam Lateral organ boundaries (LOB) domain 183 226 IPR004883 -
Cpe02g01297 289 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Cpe02g01297 289 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 176 - -
Cpe02g01297 289 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 183 288 - -
Cpe02g01297 289 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 183 288 - -
Cpe02g01297 289 Coils Coil 120 140 - -
Cpe02g01297 289 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 17 176 - -
Cpe02g01297 289 Coils Coil 215 235 - -
Cpe02g01297 289 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00236 Cpe-Chr1:1342584 Cpe02g01297 Cpe-Chr2:11546733 2.46E-26 dispersed
Cpe01g01139 Cpe-Chr1:6773070 Cpe02g01297 Cpe-Chr2:11546733 2.58E-26 dispersed
Cpe02g01297 Cpe-Chr2:11546733 Cpe05g00866 Cpe-Chr5:5685489 1.06E-32 dispersed
Cpe02g01297 Cpe-Chr2:11546733 Cpe02g01298 Cpe-Chr2:11553764 2.21E-61 tandem
Cpe16g00556 Cpe-Chr16:6368390 Cpe02g01297 Cpe-Chr2:11546733 4.99E-37 wgd
Cpe16g00556 Cpe-Chr16:6368390 Cpe02g01297 Cpe-Chr2:11546733 4.99E-37 wgd
Cpe02g01297 Cpe-Chr2:11546733 Cpe20g00754 Cpe-Chr20:6701146 1.19E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49079 PF03195 LOB 1.90E-40 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01297 - - csv:101222262 275.404