Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g01297 | ATGACTGACGCAAAATCCGGTCCAACTTCAATCATCCTCCGGTCTCAGTCGCCGCCGCCGCCGCCGCCACCTTGTGTCCAGGCCGGCGTCGTCGTCACTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCTTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTGTCTTCGGTGCTAGCAATATCATCAAATTGCTTCAGGATCTTCCCGAATCACAAAGAGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGGTGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCTGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTAATTTGCAAGGAATTAACTCAAACGCCCGCACCAACACCACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCTCTGCCACTCCTCAGAGCTACCCTTTAGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGGTGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCTGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTAATTTGCAAGGAATTAACTCAAACGCCCGCACCAACACCACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCTCTGCCACTCCTCAGAGCTACCCTTTGTTTGATGATAGCAATATCTGGGAGGCTCTTTGGACATGA | 870 | 51.15 | MTDAKSGPTSIILRSQSPPPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSSATPQSYPLADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSSATPQSYPLFDDSNIWEALWT | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 11546733 | 11549696 | - | Cp4.1LG02g12790.1 | Cpe02g01297 | 465246 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g01297 | 289 | Pfam | Lateral organ boundaries (LOB) domain | 34 | 131 | IPR004883 | - | |
Cpe02g01297 | 289 | Pfam | Lateral organ boundaries (LOB) domain | 183 | 226 | IPR004883 | - | |
Cpe02g01297 | 289 | ProSiteProfiles | LOB domain profile. | 33 | 134 | IPR004883 | - | |
Cpe02g01297 | 289 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 17 | 176 | - | - | |
Cpe02g01297 | 289 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 183 | 288 | - | - | |
Cpe02g01297 | 289 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 183 | 288 | - | - | |
Cpe02g01297 | 289 | Coils | Coil | 120 | 140 | - | - | |
Cpe02g01297 | 289 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 17 | 176 | - | - | |
Cpe02g01297 | 289 | Coils | Coil | 215 | 235 | - | - | |
Cpe02g01297 | 289 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00236 | Cpe-Chr1:1342584 | Cpe02g01297 | Cpe-Chr2:11546733 | 2.46E-26 | dispersed | |
Cpe01g01139 | Cpe-Chr1:6773070 | Cpe02g01297 | Cpe-Chr2:11546733 | 2.58E-26 | dispersed | |
Cpe02g01297 | Cpe-Chr2:11546733 | Cpe05g00866 | Cpe-Chr5:5685489 | 1.06E-32 | dispersed | |
Cpe02g01297 | Cpe-Chr2:11546733 | Cpe02g01298 | Cpe-Chr2:11553764 | 2.21E-61 | tandem | |
Cpe16g00556 | Cpe-Chr16:6368390 | Cpe02g01297 | Cpe-Chr2:11546733 | 4.99E-37 | wgd | |
Cpe16g00556 | Cpe-Chr16:6368390 | Cpe02g01297 | Cpe-Chr2:11546733 | 4.99E-37 | wgd | |
Cpe02g01297 | Cpe-Chr2:11546733 | Cpe20g00754 | Cpe-Chr20:6701146 | 1.19E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49079 | PF03195 | LOB | 1.90E-40 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g01297 | - | - | csv:101222262 | 275.404 |