Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01346 ATGGAGTTTCATATGCTCTTTCCGGTGGTCTTTTTCTCACTCCTTGCGTCCACCGCGGCAGTCGGCGAATGGACCAACGCCCACGCCACCTTCTACGGCGGCAGCGATGCTTCTGGGACAATGGGCGGAGCTTGTGGGTATGGGAATCTGTACAGTCAAGGGTTCGGTGGGAACACCGCCGCTGTTAGCACTGCCCTGTTCAACAATGGGCTGAGCTGCGGGTCTTGCTATGAGATCAAGTGCGTGGACGACCCTCAATGGTGTCTTCCAGGCTCTGTTTTGGTCACCGCCACCAATTTCTGTCCGCCCAATAACGCCCTTCCCAACACCGCCGGCGGCTGGTGCAACCCTCCTCTGCACCATTTTGACCTCGCCCAACCTGTGTTCCTCCACATTGCCCAATACCATGCCGGAATCATCCCCGTCGCTTATCGGAGGGCTCCGTGCAAAAGAAGGGGAGGAATAAGGTTCACAATCAACGGCCATTCCTACTTCAATTTGGTGCTAATAACCAATGTGGGCGGCGCCGGAGATGTCCGGGCAGTGTCGATTAAAGGGGCGAGAAGTGGGTGGCAGTCAATGTCGAGAAATTGGGGGCAGAATTGGCAGAGCAACAACTTTTTGGATGGTCAACCCCTCTCTTTTAGGGTCACCACTAGCGACGGCCGAACACTTGTTTCGAGAAACGTGGCTCCGGCCGGTTGGTCCTTTGGCCAGACCTTCACCGGCCGTCAATTCCGGTGA 744 56.18 MEFHMLFPVVFFSLLASTAAVGEWTNAHATFYGGSDASGTMGGACGYGNLYSQGFGGNTAAVSTALFNNGLSCGSCYEIKCVDDPQWCLPGSVLVTATNFCPPNNALPNTAGGWCNPPLHHFDLAQPVFLHIAQYHAGIIPVAYRRAPCKRRGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGARSGWQSMSRNWGQNWQSNNFLDGQPLSFRVTTSDGRTLVSRNVAPAGWSFGQTFTGRQFR 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11913145 11914371 + Cp4.1LG02g12310.1 Cpe02g01346 465295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01346 247 Pfam Lytic transglycolase 59 144 IPR009009 -
Cpe02g01346 247 Gene3D - 11 150 IPR036908 -
Cpe02g01346 247 PANTHER EXPANSIN-A15 9 246 IPR002963 GO:0009664
Cpe02g01346 247 SUPERFAMILY Barwin-like endoglucanases 23 172 IPR036908 -
Cpe02g01346 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 154 IPR007112 -
Cpe02g01346 247 SMART dpbb_1 59 144 IPR007112 -
Cpe02g01346 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Cpe02g01346 247 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Cpe02g01346 247 Gene3D - 154 246 IPR036749 -
Cpe02g01346 247 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Cpe02g01346 247 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Cpe02g01346 247 PRINTS Expansin signature 93 103 IPR002963 GO:0009664
Cpe02g01346 247 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Cpe02g01346 247 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Cpe02g01346 247 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Cpe02g01346 247 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Cpe02g01346 247 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Cpe02g01346 247 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Cpe02g01346 247 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Cpe02g01346 247 PANTHER EXPANSIN 9 246 - -
Cpe02g01346 247 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Cpe02g01346 247 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Cpe02g01346 247 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Cpe02g01346 247 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Cpe02g01346 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Cpe02g01346 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00826 Cpe-Chr1:4910298 Cpe02g01346 Cpe-Chr2:11913145 1.33E-80 dispersed
Cpe01g01474 Cpe-Chr1:8805796 Cpe02g01346 Cpe-Chr2:11913145 5.47E-81 dispersed
Cpe02g01346 Cpe-Chr2:11913145 Cpe04g01494 Cpe-Chr4:11841897 1.61E-129 dispersed
Cpe09g00189 Cpe-Chr9:1092462 Cpe02g01346 Cpe-Chr2:11913145 5.37E-75 dispersed
Cpe16g00785 Cpe-Chr16:7738643 Cpe02g01346 Cpe-Chr2:11913145 1.34E-24 dispersed
Cpe18g00787 Cpe-Chr18:7441911 Cpe02g01346 Cpe-Chr2:11913145 7.71E-74 dispersed
Cpe02g01346 Cpe-Chr2:11913145 Cpe13g01039 Cpe-Chr13:8521044 2.90E-134 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01346 - K20628 csv:101202833 444.121