Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe02g01348 | ATGGCCTCCGATTCCAACTCCCCCGAAATCTCCTCTGTTTTCGACACCCTCATCGGAAACAGAGACCTCTCTCTCTTCATGCCCTTCCTCTTCGGCTTCTCCGCCGCCGACCCACTTCAACAATCCCAAAACCCCGCCGACCCAGATCGCCAAAACGCCAATCGGAGCGACAGGATATTTCTGGTCAACCCTTTTACTCAGAGCATGGTCGTGATCGAGGGGCGTTCGAGCTTGGAAGCACTGATGCGTGATCTCGGCGGGAAGGACGGCCAGCCGCCGGCGTCCAGAGCATCCATAGAAGCGCTGCCAACCGTTCAAATCATGGCAGAGGAGTTGGGTTGTGAGTGTGTGATCTGCTTGGATGAGTGGGAGATTGGGGCTGTGGCTAAAGAACTGCCCTGCGGACACAAATTTCATCCCGATTGTATAGAGAAATGGCTTGGGGTTCATGGGAATTGCCCTCTTTGTAGGTGCAAGCTGCCGGATGATGTTGATCGGAAGAACAACGAGGGGCGGCGGGCGAGGGAGATTTGGGTCGGTTTTTCTTTCAATAATGATCGGAGAAGTGAGGGTTCTAATGGAGTTTCTTCAGATGATGGAGCTTAG | 606 | 53.8 | MASDSNSPEISSVFDTLIGNRDLSLFMPFLFGFSAADPLQQSQNPADPDRQNANRSDRIFLVNPFTQSMVVIEGRSSLEALMRDLGGKDGQPPASRASIEALPTVQIMAEELGCECVICLDEWEIGAVAKELPCGHKFHPDCIEKWLGVHGNCPLCRCKLPDDVDRKNNEGRRAREIWVGFSFNNDRRSEGSNGVSSDDGA | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 11923688 | 11924293 | - | Cp4.1LG02g12230.1 | Cpe02g01348 | 465297 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe02g01348 | 201 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 26 | 198 | - | - | |
| Cpe02g01348 | 201 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 26 | 198 | - | - | |
| Cpe02g01348 | 201 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 164 | IPR013083 | - | |
| Cpe02g01348 | 201 | SUPERFAMILY | RING/U-box | 104 | 163 | - | - | |
| Cpe02g01348 | 201 | SMART | ring_2 | 116 | 156 | IPR001841 | - | |
| Cpe02g01348 | 201 | CDD | RING-H2_PA-TM-RING | 115 | 157 | - | - | |
| Cpe02g01348 | 201 | Pfam | Ring finger domain | 115 | 157 | IPR001841 | - | |
| Cpe02g01348 | 201 | ProSiteProfiles | Zinc finger RING-type profile. | 116 | 157 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g01470 | Cpe-Chr1:8790792 | Cpe02g01348 | Cpe-Chr2:11923688 | 3.12E-46 | dispersed | |
| Cpe02g01348 | Cpe-Chr2:11923688 | Cpe13g00954 | Cpe-Chr13:7992308 | 1.22E-32 | dispersed | |
| Cpe02g01348 | Cpe-Chr2:11923688 | Cpe09g00183 | Cpe-Chr9:1058612 | 2.61E-48 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe02g01348 | - | - | zju:107429014 | 250.366 |