Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01353 ATGGAGCAAGGAGCTATTGAGCCAAAGGGCACGGCGGACATAGACAATTCAAGCTCATACAAAAAGATCATAATAGTTGCAGCCATTGCAGCCGGAATCCAATTCGGTTGGGCTCTGCAGCTCTCATTACTAACACCATACGTCCAACAACTCGGTGTTTCGCACACATGGTCAGCTTTCATTTGGCTCTGTGGTCCAATGTCCGGCCTAATTGTACAGCCAACCGTCGGCTACTACAGCGATCGCTGCACCTCGAGGTTCGGTCGCCGTCGTCCCTTCATCGTAGCCGGAGCTATATCGGTAGCCGCCGCAGTTTTCCTCATTGGCTTTGCAGCAGACATTGGGCATTCACTAGGAGATCAACTCACCAAACCCACAAAACCAAGGGCAGTGACAATCTTCGTGGTCGGATTTTGGGTTCTTGATGTCGCTAACAACATGTTACAAGGCCCTTGTCGAGCTTTGTTAGCTGATATGTCATGTAGCAACCAAAAGAAAATGAGGGTCGCTAATGGATTCTTCTCATTCTTTATGGGCGTAGGGAATGTCTTAGGGTATGCAGCAGGGTCCAATAGCTCACTCTATAAGCTCCTTCCATTTACCATCACTAAAGCTTGTGATGCTTATTGCGCTAATCTCAAGACATGTTTTTTAATCGACATTGTGTTGCTGCTAGCCATTACAACAGCCGCCGTGTTGTTAGTGAGCGAGAGGCCTTATGAGAACGCTATTGACAACGAAACAGAGCCGTTTTTTGGGCAATTGTGTGGGGCTCTCAAGCGGCTGTCAAAGCCCATGTGGGTGTTGTTGCTTGTCACAGCATTGAATTGGATTGGTTGGTTTCCTTTTATAATGTATGACACGGATTGGATGGGCGCTGAAGTGTATGGTGGCAAGCCACAGGGGACGCCAGAACAAGAGAGGAATTATGACCTTGGTGTGCGAGCAGGGGCGCTTGGTTTGATGGTTAACTCATTTGTTCTTGGGTTTACTGCATTGGGTATTGAGCCAATTAGCCGTGCTGTTGGTGGGCTAAGATGGGTTTGGGGAATTGTGAATGTTGTATTGGCAATTTGTATGGGGTGCACGGTGGCTGTCACGAAGGCGGCAGAGAAATGGAGGGCTGTTCACGGCGGCTTGGCGCTTCCTCCGCCGGATGTTAAAGGTGGTGCCTTTGCGATCTTTGCGATATTGGGTGTTCCGTTATCGGTGACTTATAGTGTTCCGTTTGCTCTTGCGTCGATCTTTTCGTTGTCATCGAATGCAGGGCAAGGGCTGTCTTTGGGGATTTTGAATCTGTTTATAGTGATACCGCAGTTCTTTGTGTCGGCTGTTAGTGGGCCGCTTGATGCTGCTCTTGGAGGGGGGAATTTGCCGGCTTTTGTCATGGGGGGGATTGCTGCGGCTGTGAGTGCTGTGTGTGCTATGTTTTTGCTTCCTGATCCGCCGCCGGAGACTCATGTTGCTGTCACGATGGGGGCTGGGCATTGA 1491 49.63 MEQGAIEPKGTADIDNSSSYKKIIIVAAIAAGIQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPMSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGAISVAAAVFLIGFAADIGHSLGDQLTKPTKPRAVTIFVVGFWVLDVANNMLQGPCRALLADMSCSNQKKMRVANGFFSFFMGVGNVLGYAAGSNSSLYKLLPFTITKACDAYCANLKTCFLIDIVLLLAITTAAVLLVSERPYENAIDNETEPFFGQLCGALKRLSKPMWVLLLVTALNWIGWFPFIMYDTDWMGAEVYGGKPQGTPEQERNYDLGVRAGALGLMVNSFVLGFTALGIEPISRAVGGLRWVWGIVNVVLAICMGCTVAVTKAAEKWRAVHGGLALPPPDVKGGAFAIFAILGVPLSVTYSVPFALASIFSLSSNAGQGLSLGILNLFIVIPQFFVSAVSGPLDAALGGGNLPAFVMGGIAAAVSAVCAMFLLPDPPPETHVAVTMGAGH 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11947402 11948892 - Cp4.1LG02g12210.1 Cpe02g01353 465302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01353 496 CDD MFS_SLC45_SUC 34 477 - -
Cpe02g01353 496 SUPERFAMILY MFS general substrate transporter 22 485 IPR036259 -
Cpe02g01353 496 Gene3D MFS general substrate transporter like domains 16 487 IPR036259 -
Cpe02g01353 496 TIGRFAM GPH_sucrose: sucrose/H+ symporter 19 483 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cpe02g01353 496 Pfam MFS/sugar transport protein 28 279 - -
Cpe02g01353 496 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 20 489 - -
Cpe02g01353 496 PANTHER SUGAR TRANSPORTER 20 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01353 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 773.467
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00193 Cpe-Chr7:1211848 Cpe02g01353 Cpe-Chr2:11947402 1.80E-158 transposed
Cpe07g00646 Cpe-Chr7:4628819 Cpe02g01353 Cpe-Chr2:11947402 4.66E-120 transposed
Cpe11g00702 Cpe-Chr11:5080334 Cpe02g01353 Cpe-Chr2:11947402 1.54E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe02g01353 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.1 1.7e-179 626.3
Cpe07g00193 . 32 496 Sucrose Transporter Gene Family AT1G22710 50.9 2.9e-139 492.7
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.6 1.2e-177 620.2
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.4 6.4e-136 481.5
Cpe02g01353 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.5 1.8e-148 523.1
Cpe07g00646 . 152 562 Sucrose Transporter Gene Family AT2G02860 63.0 4.0e-156 548.5
Cpe02g01353 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 1.4e-162 570.1
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.2 2.0e-174 609.4
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Cpe07g00193 . 12 503 Sucrose Transporter Gene Family AT1G09960 71.8 9.4e-207 716.8
Cpe02g01353 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.5 2.7e-129 459.5
Cpe02g01353 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 2.3e-173 605.9
Cpe07g00193 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 2.5e-135 479.6
Cpe02g01353 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 1.9e-167 586.3
Cpe02g01353 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 2.3e-173 605.9
Cpe07g00193 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 2.5e-135 479.6
Cpe02g01353 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.1 1.7e-179 626.3
Cpe07g00193 . 32 496 Sucrose Transporter Gene Family AT1G22710 50.9 2.9e-139 492.7
Cpe07g00646 . 152 562 Sucrose Transporter Gene Family AT2G02860 63.0 4.0e-156 548.5
Cpe07g00193 . 12 503 Sucrose Transporter Gene Family AT1G09960 71.8 9.4e-207 716.8
Cpe02g01353 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.5 2.7e-129 459.5
Cpe02g01353 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 1.9e-167 586.3
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.2 2.0e-174 609.4
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Cpe02g01353 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.5 1.8e-148 523.1
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.6 1.2e-177 620.2
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.4 6.4e-136 481.5
Cpe02g01353 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 1.4e-162 570.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g01353 Cpe_Chr02 FPKM 8.068198 10.327926 4.533748 5.310237 10.776032 7.519567 10.316696 7.606472 7.033769 7.491537