Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01377 ATGGGTACCTCTTTGTTGTCGTTTTCAGTGATCAAATGGTTCTCTTCTTGTGTAAACACTTTGCCGATACTTACTTCCAAGCTCTTTTTGCTTTTCTGCTTCGTTATTTTATTTCAGACTGAAGTTATTTTGGGCGATTCAGATAAATCGGTGCTTCTTCAGTTCAAAAATGCTGTTTCTGATCCATCGGGGTTGCTTGCGAGTTGGACTGCGAGTGGGTCTGATTGCTGTGTCTGGTTTGGTGTTTCTTGCGACTTGAATTCTCGGGTTGTGTCACTCAACATTTCCGGGAATGGCGGTGGAGGTCATTTGTGCTCTGATTCTTCTAAATTTCCTCTTTATGGGCTTGGAATTAGGAGGGGTTGTGTGGGTATTAGAGGCTCACTGATTGGGAAGATTCCGCCGGTGATCGGGAAGCTCACTGAGCTTAGGAATAGCCTCAGTGGTCCGATACCGTCTCAGCTGGGAAACTGCCTGCAGTTGTCTGTTCTTGTGCTCTCGAATCTCTTCGATCCAATTCCGAAGATCAATTACACAGACGAAGACGAACTTAGTGATGATGGTTTTAACTATTTTGCAGGCAGTATACCTGAGTCGATAACAGCCCTTCCAAAGCTGAAGATACTGTGGGCTCCTAATTCAAATCTCGAAGGCAGATTCCCTTCCAAATGGGGTAAGTGTGAAAGCTTGGAGATGATTAACTTAGCTGGTAATTACCTTTATGGGGAGCTTCCTAGTGAGCTTAGCGTCTGCAAAAAGCTCAAAGTCCTTGATTTAAGCTCCAACCGGCTTTCTGGTGAGCTCGATAAAAACCTTCCAGTTCCTTATATGTCTCTGTTTGATCTTAGTGGTAACCACTTTATTGGAGACATTCCTGTGTTCTGTGGCAATGATTGCTCGCCAAGCTCGCCACCGATGTTCTTTTCAAGGGGATATTTGGATCTTGATGATCCATCGTCTCGATATCTTGCATTTTTTACCACTAGTATTCGAGGTGCAACCCCTTTTGAATTTCTTGGAGATGATGACCTGATAGTACATAACTTAGGGGAGAATAACTTTACAGGAAATCTTCTGTCGTTTCCGATTCCACGTGAAAGACTGGGTAAGAAAACTGTTTATGCTTATCTTGTGGGTGGTAATAAGCTCACCGGGCCATTCCCTGATAGTATATTTGAGAAATGTGAGGACATGGGAGGACTGATCTTCAATGTTAGCAATAACAAGATATCTGGTCCATTTTCTAAGTCAATTGGTAAAAACTGTGGTTCTCTCAAGTTCTTGGATGCATCTGGTAATCAGATGACTGGTGAGGTACCTCCCAGCTTTGGTGATCTATTAGCTCTGAATCACCTGAACCTGAGCTGGAACAAGTTTCAGTATCACATACCAGCCTCTCTCGGACAGATTGCTGGTTTAAAGTACCTTTGTTTGGCTGGCAATAGCTTTAATGGTTCTATACCCTCGACCTTCGGAAAGTTGCAGGCTTTGGAGTTGCTTGATCTTGCGTATAACGATCTTTCGGGTGGAATTCCAGTCGATCTTGTTAAATTGAGAGGCCTAAAAGTTCTGCTGCTCAACAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTGGCAAATGTTACTACACTCTCTGCATTTAATGTGTCATTCAATAACTTGTCTGGTTCCTTGCCATCAAACAACATGATTAAATGTAGTGGTGCGATTGGAAACCCGTACCTACGCTCGTGCCATATGTTTTCACTGGCAGTGCCATCGTCTGAAATGCGAGGTTCAGTTGGCGACCCGAGTAGTCTTGCAGCTTCACCGTCTGATGTTGTACCACAGACTGGAGGAGGTGGCAGCTTCAATTCAATTGAGATAGCATCCATTACATCTGCCTCCGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTGTTTCTATATACCCGAAAGTGGAATTCGAGGTCTAAAGTTATTGGATCAATGAGAAGGGAAGTCACGGTTTTTACTGATATTGGGGTTTCTTTGACATTTGAGAATGTCGTTCGTGCCACAAACAATTTCAATACCAGTAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAAGCAGAGATTGCATCGGGAGTGCTACTTGCAATAAAACGCCTCGCTGTTGGTCGATTTCAAGGCGTCCAACAGTTCGATGCAGAGATTAAAACTCTTGGAAGGCTGCGCCACCCGAACCTCGTCACCTTAATTGGTTACCATGCCAGTGAAACAGAGATGTTCTTGATATATAATTATTTGCCAGGAGGTAATTTGGAAAAGTTCATCCAGGAGAGATCTACAAGAGCAGTGGATTGGAGAATTCTTCACAAGATCGCACTGGACATAGCCCGTGCGCTTGCATATCTTCATGATCAGTGCGTACCACGAGTCCTCCACCGCGACGTGAAACCGAGCAATATACTATTAGACGACGATTTCAATGCTTATCTCTCTGATTTTGGATTGGCCAGGCTTCTTGGGACTTCTGAAACCCATGCTACAACAGGTGTGGCTGGAACATTCGGCTACGTCGCTCCCGAATACGCCATGACTTGTCGTGTCTCTGATAAAGCAGACGTGTACAGTTACGGTGTGGTGCTTCTCGAGCTACTCTCGGACAAGAAAGCACTAGATCCCTCGTTTTCCTTGTACGGTAATGGCTTTAACATTGTAGCTTGGGCATGTATGCTGCTTCCACAGGGACGCGCCAAGGAATTCTTCACATCAGGGTTATGGGAGGTAGGCCCCCATGATGATCTGGTTGAAGTATTACACTTAGCAGTTGTGTGTACAGTCGATTCTCTGTCGACGAGGCCGACGATGAAGCAGGTGGTACGGCGGCTTAAGCAGCTTCAACCGCCGTCATGTTAG 2895 44.87 MGTSLLSFSVIKWFSSCVNTLPILTSKLFLLFCFVILFQTEVILGDSDKSVLLQFKNAVSDPSGLLASWTASGSDCCVWFGVSCDLNSRVVSLNISGNGGGGHLCSDSSKFPLYGLGIRRGCVGIRGSLIGKIPPVIGKLTELRNSLSGPIPSQLGNCLQLSVLVLSNLFDPIPKINYTDEDELSDDGFNYFAGSIPESITALPKLKILWAPNSNLEGRFPSKWGKCESLEMINLAGNYLYGELPSELSVCKKLKVLDLSSNRLSGELDKNLPVPYMSLFDLSGNHFIGDIPVFCGNDCSPSSPPMFFSRGYLDLDDPSSRYLAFFTTSIRGATPFEFLGDDDLIVHNLGENNFTGNLLSFPIPRERLGKKTVYAYLVGGNKLTGPFPDSIFEKCEDMGGLIFNVSNNKISGPFSKSIGKNCGSLKFLDASGNQMTGEVPPSFGDLLALNHLNLSWNKFQYHIPASLGQIAGLKYLCLAGNSFNGSIPSTFGKLQALELLDLAYNDLSGGIPVDLVKLRGLKVLLLNNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNMIKCSGAIGNPYLRSCHMFSLAVPSSEMRGSVGDPSSLAASPSDVVPQTGGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVIGSMRREVTVFTDIGVSLTFENVVRATNNFNTSNCIGSGGFGATYKAEIASGVLLAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSLYGNGFNIVAWACMLLPQGRAKEFFTSGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12102329 12105739 + Cp4.1LG02g14100.1 Cpe02g01377 465326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01377 964 ProSiteProfiles Protein kinase domain profile. 685 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g01377 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 144 963 - -
Cpe02g01377 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 27 144 - -
Cpe02g01377 964 Gene3D Ribonuclease Inhibitor 186 298 IPR032675 -
Cpe02g01377 964 SUPERFAMILY L domain-like 191 562 - -
Cpe02g01377 964 SUPERFAMILY Protein kinase-like (PK-like) 669 956 IPR011009 -
Cpe02g01377 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Cpe02g01377 964 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 144 963 - -
Cpe02g01377 964 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 27 144 - -
Cpe02g01377 964 SMART serkin_6 685 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g01377 964 Gene3D Phosphorylase Kinase; domain 1 647 760 - -
Cpe02g01377 964 SUPERFAMILY L domain-like 62 293 - -
Cpe02g01377 964 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Cpe02g01377 964 CDD STKc_IRAK 691 959 - -
Cpe02g01377 964 Pfam Leucine rich repeat 472 531 IPR001611 GO:0005515
Cpe02g01377 964 ProSitePatterns Protein kinases ATP-binding region signature. 691 713 IPR017441 GO:0005524
Cpe02g01377 964 Pfam Protein kinase domain 687 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe02g01377 964 Gene3D Ribonuclease Inhibitor 46 185 IPR032675 -
Cpe02g01377 964 Gene3D Transferase(Phosphotransferase) domain 1 761 961 - -
Cpe02g01377 964 Gene3D Ribonuclease Inhibitor 322 584 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01377 Cpe-Chr2:12102329 Cpe17g00496 Cpe-Chr17:4056437 9.30E-44 dispersed
Cpe02g01377 Cpe-Chr2:12102329 Cpe04g01569 Cpe-Chr4:12287161 1.28E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62238 PF00069 Pkinase 4.00E-43 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01377 - - csv:101218045 1403.65