Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01396 ATGGGCAGAGGGAGAGTGCAGCTCAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCTAAGCGTAGAGCTGGGCTGCTCAAAAAGGCCCATGAGATCTCTGTCCTTTGCGATGCAGATGTTGCCTTGATTGTCTTCTCCACCAAAGGAAAGCTCTTTGAGTACTCCACTCATGCCAGCATGGAGAAGATCTTGGAAAAATACGAGAGGTGTTCTTATGCAGAGAGACCATTGGCCACAAATGCAGATTCTGATTTACAGGTAAGTTGGTGCGAGGAGTACCCAAAAATTGCAGCCAGAATGGAAATTATACAGAAGAACATCAGGCGTTATTTGGGAGAAGAGCTTGAGCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAGCAACTTGATTCATCACTGAAGCGCATAAGAGCCAGAAAGAACCAACTAATGCAAGAATCTATCTCATTGCTACACAAAAAGGAAAGGGAACTGCAAGAGGAGAACAGGCAGCTTGCAAACAAGGTAAAGGAGAATGAGAAAGCTTTGGTTGAACAGCAAACTTGCATGATGGGAGAGGCTCAACAGGATCAGATGAAGATGAAACAAGGCCAACAAGCACCAACATCCAAATACCAGCCTGGATGCTTAGCCATGTGA 651 45.01 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSTHASMEKILEKYERCSYAERPLATNADSDLQVSWCEEYPKIAARMEIIQKNIRRYLGEELEPLNLRELQSLEQQLDSSLKRIRARKNQLMQESISLLHKKERELQEENRQLANKVKENEKALVEQQTCMMGEAQQDQMKMKQGQQAPTSKYQPGCLAM 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12203422 12209125 - Cp4.1LG02g13950.1 Cpe02g01396 465345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01396 216 PANTHER BNAA09G02740D PROTEIN 1 193 - -
Cpe02g01396 216 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Cpe02g01396 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 193 - -
Cpe02g01396 216 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cpe02g01396 216 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Cpe02g01396 216 Coils Coil 123 182 - -
Cpe02g01396 216 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe02g01396 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe02g01396 216 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe02g01396 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe02g01396 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe02g01396 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe02g01396 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe02g01396 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe02g01396 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01396 Cpe03g00969 CCT
Cpe02g01396 Cpe03g00969 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01396 Cpe-Chr2:12203422 Cpe09g01156 Cpe-Chr9:9836724 1.69E-80 dispersed
Cpe10g00015 Cpe-Chr10:104578 Cpe02g01396 Cpe-Chr2:12203422 4.67E-38 dispersed
Cpe19g00176 Cpe-Chr19:1423294 Cpe02g01396 Cpe-Chr2:12203422 4.45E-33 dispersed
Cpe02g01396 Cpe-Chr2:12203422 Cpe02g01397 Cpe-Chr2:12211748 9.58E-59 tandem
Cpe14g00135 Cpe-Chr14:725287 Cpe02g01396 Cpe-Chr2:12203422 4.64E-06 transposed
Cpe11g00399 Cpe-Chr11:2202574 Cpe02g01396 Cpe-Chr2:12203422 5.63E-19 wgd
Cpe02g01396 Cpe-Chr2:12203422 Cpe20g00089 Cpe-Chr20:477882 3.21E-80 wgd
Cpe02g01396 Cpe-Chr2:12203422 Cpe03g00969 Cpe-Chr3:7585925 1.23E-104 wgd
Cpe02g01396 Cpe-Chr2:12203422 Cpe09g01155 Cpe-Chr9:9833003 1.30E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49091 PF01486 K-box 2.20E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01396 K09264 - csv:101218674 308.531