Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01397 ATGGGAAGAGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAGGTAACATTTGCTAAGAGAAGGAGTGGGCTGTTGAAGAAAGCTTATGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAATCGTGGCAAGCTCTATGAGTTTTGTAGCACTTCCAACATGCTTAAGACACTGGAAAGGTACCAGAAATGCAGTTATGGAGCTGTCGAGGTCGCCAAACCCGCCAAAGAGCTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGAGCTGGGTCCATTGAACTCTAAAGAGCTTGAGCAGCTGGAGCGTCAGCTCGAGTCTTCTTTGAAGCAAGTTAGGTCTACTAAGACCCAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGATCTCTAACATTAAAGCTAGAAGAAATGAGTTCAAGAAACAACATAAGACTAACATGGGAAGAAGTAGACCAAAGCATGTCATATGCACCACAGAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGATTGCAACCCCACTCTGCAAATTGGGTACAGTGGTTCAGTATCAGATCAAATTACAGCCACCACTGCCCCAAATCATGCCCAACAAGTCAATGCCTTTCTCCCTGGTTGGATGCTTTGA 741 44.26 MGRGRVELKRIENKINRQVTFAKRRSGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVAKPAKELESSYREYLKLKARFESLQRTQRNLLGEELGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRSLTLKLEEMSSRNNIRLTWEEVDQSMSYAPQNAQTQGFFQPLDCNPTLQIGYSGSVSDQITATTAPNHAQQVNAFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12211748 12215388 - Cp4.1LG02g13910.1 Cpe02g01397 465346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01397 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cpe02g01397 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe02g01397 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Cpe02g01397 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cpe02g01397 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe02g01397 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe02g01397 246 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe02g01397 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe02g01397 246 Coils Coil 121 144 - -
Cpe02g01397 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Cpe02g01397 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cpe02g01397 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe02g01397 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe02g01397 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe02g01397 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01397 Cpe03g00970 CCT
Cpe02g01397 Cpe03g00970 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00970 Cpe-Chr1:5779955 Cpe02g01397 Cpe-Chr2:12211748 9.54E-27 dispersed
Cpe02g01397 Cpe-Chr2:12211748 Cpe03g00970 Cpe-Chr3:7616271 1.90E-166 dispersed
Cpe02g01396 Cpe-Chr2:12203422 Cpe02g01397 Cpe-Chr2:12211748 9.58E-59 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49092 PF01486 K-box 2.70E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01397 K09264 - csv:101208204 442.965