Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01426 ATGGTTCAGCCGACAAATCCATCCAAATTGCGATGGGGGGAGCTAGATGACGATGATGGGGATCTCGATTTTCTTCTTCCTCCCAAGCAAGTTATTGGGCCGGACGAAAATGGGTTGAAGAAAACTATTGAGTATCAGTTTAACGAAGATGGAAACAAGGTCAAAATCACGACGACCTCTCGAACGCGCAAGCTTGCTAATGCTCGTCTGAGTAAACATGCCATAGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTACATGAAGACGTCGGAAGTAGGCTCACTATGGTCTCGACCGAGGAGATTCTTCTCGAGCGTCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCAAAGGTTGCTGGAGATCCTCTAGCTCAACTTGGAAAAGGTGGAGCTGTTCTTATGGTCTGCCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCATCACAAGCTGATGGATTGGATAAGACTGTTGCACCAGAGGCTACAACTGCCGCTCCTGGTGCAACGAAGGGAGCGTATGTACCTCCAGGTATGAGAGCAGGGGCAGAGAGGACTGGAACTGACATGAGACGTAGAAATGATGAAAACTCTGTTCGTGTGACCAACCTGTCGGAGGATACTAGAGAGCCTGACTTACTTGAGCTTTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTCGCTGTTGATCAAAAGACTGGCATGAGCAGAGGATTTGGTTTTGTTAACTTTGTGAACCGTGAGGATGCACAAAGAGCAATTAACAAACTCAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGGGCGACTTAA 867 48.44 MVQPTNPSKLRWGELDDDDGDLDFLLPPKQVIGPDENGLKKTIEYQFNEDGNKVKITTTSRTRKLANARLSKHAIERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLASQADGLDKTVAPEATTAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12380147 12382256 - Cp4.1LG02g17060.1 Cpe02g01426 465375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01426 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676
Cpe02g01426 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Cpe02g01426 288 Gene3D - 170 288 IPR012677 -
Cpe02g01426 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Cpe02g01426 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Cpe02g01426 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cpe02g01426 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cpe02g01426 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 275 IPR000504 GO:0003723
Cpe02g01426 288 CDD eIF3G 37 156 IPR024675 -
Cpe02g01426 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Cpe02g01426 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Cpe02g01426 288 Pfam Eukaryotic translation initiation factor 3 subunit G 30 157 IPR024675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01426 Cpe-Chr2:12380147 Cpe12g00570 Cpe-Chr12:5796751 8.07E-12 dispersed
Cpe20g00049 Cpe-Chr20:222483 Cpe02g01426 Cpe-Chr2:12380147 0 transposed
Cpe02g01426 Cpe-Chr2:12380147 Cpe03g00695 Cpe-Chr3:4208854 0 wgd
Cpe02g01426 Cpe-Chr2:12380147 Cpe03g01015 Cpe-Chr3:8291590 1.11E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01426 K03248 - csv:101207022 544.658