Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01427 ATGTCGGAAGAAACCATCCCGATAGATTACGTCATGGAAGCCGCCTCTGGACCTCACTTCTCTGGCCTCCGGCTCGACGGACGTCTCTCCTCTCCGCCGTCTTCCTCAACTTCCTCTCCGGCTCATCGTTATCCTGTTTCCTCTTCCTTTGCGCAGGCCGATGCCAACACTCCTAAGCAGCCCTTCGTCATCGGTGTTTCTGGAGGTACTGCATCTGGGAAGACGACCGTGTGTGACATGATTATCCAGCAACTTCATGATCATAGGGTAGTGCTGGTCAATCAGGACTCGTTTTACCGCGGATTGACAGCTGAGGAACTAGAACGTGTGCACGAGTATAACTTTGATCATCCTGATTCGTTTGACACCGAACAGCTTGTGGATTGCATCGAGAAGCTAAAGAGTGGGCAATCGTACCATGTCCCAATTTATGATTTTAAAACTCATCAACGCTGTGTAGATAGCTTTCGACAGGTAAATGCATCCAATGTTATCATCTTGGAAGGTATTTTGGTTTTCCATGATCAAAGAGTCCGCAATCTGATGAACATGAAGATATTTGTTGACACAGAGCCTGATGTGAGACTTGCTCGTAGAATTAGACGCGATACGGTAGAAAGGGGCAGGGACATTAACTCTGTCCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTTGTTCTGCCGTCAAAGAAGTATGCCGATGTGATCATACCACGTGGGGGTGAGAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACAAAATTAGGCCAGCATGACCTTTGCAAAATATACCCCAATGTTACTGTCATTCAGTCAACATTTCAGATAAGAGGTATGCATACATTAATTCGAGACCAGGACATTTCAAAGCACGATTTTGTGTTCTACTCAGATAGACTTATTCGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAAAAACAAGTGGTCACTCCAACTGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCTATCATTCGAAGTGGTGAAAGCATGGAAAATGCATTGCGAGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGCGAGGGAGATAATGGGATGCAGCTGATATACCAGAAATTACCCAATGATATATCAGAGCGACATGTCCTACTCCTAGATCCTGTTCTCGCCACTGGCAACTCAGCTAATCAAGCAATTGATCTATTAATACAGAAGGGAGTTCCAGAATCGCACATAATATTCCTCAACTTGATCTCTGCCCCCGAGGGGATTCACTGTGTTTGCAAACGATTCCCATCCTTGAAAATTGTCACTTCTGAGATCGATGCTGGATTGAACAAAGAATATCGTGTCATACCCGGACCGTTTGTCGTATTAATTTACTTGTCGATTCACCATACATCTTATGCCATCCAGATCGACCAGAGCTCTGCCATAGCTATTGCCACCGCTCGGGCAAGTCATTGGCGACTGGGAGAACAATGCTTCATGGTTTGCTGCAGGTGCGCCATCCATTACTTTTTTGTTCGTCATGCTCGTATTAAAACTTAG 1596 44.67 MSEETIPIDYVMEAASGPHFSGLRLDGRLSSPPSSSTSSPAHRYPVSSSFAQADANTPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQSYHVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTEPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGENHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDQDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGMQLIYQKLPNDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDAGLNKEYRVIPGPFVVLIYLSIHHTSYAIQIDQSSAIAIATARASHWRLGEQCFMVCCRCAIHYFFVRHARIKT 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12387639 12394003 + Cp4.1LG02g17210.1 Cpe02g01427 465376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01427 531 MobiDBLite consensus disorder prediction 28 44 - -
Cpe02g01427 531 CDD UMPK 63 261 IPR000764 -
Cpe02g01427 531 ProSiteProfiles UvrC family, homology region profile. 167 250 IPR001162 GO:0009381
Cpe02g01427 531 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 457 IPR029930 GO:0004849|GO:0044206
Cpe02g01427 531 TIGRFAM udk: uridine kinase 60 261 IPR000764 -
Cpe02g01427 531 MobiDBLite consensus disorder prediction 23 44 - -
Cpe02g01427 531 PRINTS Uridine kinase signature 229 242 - -
Cpe02g01427 531 PRINTS Uridine kinase signature 136 151 - -
Cpe02g01427 531 PRINTS Uridine kinase signature 207 218 - -
Cpe02g01427 531 PRINTS Uridine kinase signature 61 78 - -
Cpe02g01427 531 PRINTS Uridine kinase signature 91 102 - -
Cpe02g01427 531 PRINTS Uridine kinase signature 193 203 - -
Cpe02g01427 531 PANTHER URIDINE KINASE 16 457 - -
Cpe02g01427 531 Pfam Uracil phosphoribosyltransferase 279 469 - -
Cpe02g01427 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Cpe02g01427 531 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524|GO:0016301
Cpe02g01427 531 CDD PRTases_typeI 338 453 IPR000836 -
Cpe02g01427 531 SUPERFAMILY PRTase-like 264 469 IPR029057 -
Cpe02g01427 531 Gene3D - 265 470 IPR029057 -
Cpe02g01427 531 Gene3D - 57 264 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01427 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 881.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01427 Cpe-Chr2:12387639 Cpe04g00495 Cpe-Chr4:5540866 0 dispersed
Cpe10g00910 Cpe-Chr10:5082161 Cpe02g01427 Cpe-Chr2:12387639 5.01E-08 dispersed
Cpe02g01427 Cpe-Chr2:12387639 Cpe06g00842 Cpe-Chr6:5415010 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe16g00281 CST 82 562 PRT Gene Family AT2G16570 84.5 2.5e-240 828.6
Cpe05g01298 CST 70 556 PRT Gene Family AT2G16570 83.2 2.7e-239 825.1
Cpe05g01298 CST 72 556 PRT Gene Family AT4G34740 85.0 1.1e-243 839.7
Cpe16g00281 CST 82 562 PRT Gene Family AT4G34740 85.3 1.7e-241 832.4
Cpe16g00281 CST 25 535 PRT Gene Family AT4G38880 69.5 3.0e-200 695.3
Cpe05g01298 CST 69 529 PRT Gene Family AT4G38880 73.0 1.9e-194 676.0
Cpe01g02140 . 1 170 PRT Gene Family AT1G71750 59.9 2.3e-60 229.2
Cpe06g00842 . 40 468 PRT Gene Family AT1G55810 87.2 1.1e-219 759.6
Cpe02g01427 . 19 469 PRT Gene Family AT1G55810 73.2 2.2e-191 665.6
Cpe04g00495 . 19 459 PRT Gene Family AT1G55810 72.5 6.8e-185 644.0
Cpe06g00842 . 65 467 PRT Gene Family AT3G27440 77.2 1.1e-184 643.3
Cpe02g01427 . 80 469 PRT Gene Family AT3G27440 74.6 1.4e-171 599.7
Cpe04g00495 . 80 459 PRT Gene Family AT3G27440 74.0 4.6e-167 584.7
Cpe02g01427 . 1 469 PRT Gene Family AT3G27190 85.5 4.1e-236 814.3
Cpe04g00495 . 1 459 PRT Gene Family AT3G27190 84.6 6.8e-231 797.0
Cpe06g00842 . 51 467 PRT Gene Family AT3G27190 79.9 2.8e-200 695.3
Cpe10g00910 . 4 266 PRT Gene Family AT3G53900 61.0 1.2e-92 337.0
Cpe06g00842 . 30 468 PRT Gene Family AT4G26510 81.7 4.3e-222 767.7
Cpe02g01427 . 11 469 PRT Gene Family AT4G26510 74.3 8.4e-202 700.3
Cpe04g00495 . 7 459 PRT Gene Family AT4G26510 74.2 1.1e-196 683.3
Cpe02g01427 . 1 469 PRT Gene Family AT5G40870 86.0 7.0e-236 813.5
Cpe04g00495 . 1 459 PRT Gene Family AT5G40870 84.6 3.1e-231 798.1
Cpe06g00842 . 51 470 PRT Gene Family AT5G40870 78.8 1.4e-199 693.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g01427 Cpe_Chr02 FPKM 0.547276 0.480999 2.734271 2.860375 0.0 0.0 0.0 0.0 0.0 0.0