Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01449 ATGTTCTTGTCATGGAGGAGAAGCAAACTTGGGTTTCTCCCCAAGTTGAAGAAAGAGCATCTTCCGGGCGTTGATTCGGGTTCTGAAATTGTGATTCCTTCGCATTTTCTATGTCCGATTTCGCTTGATTTGATGAAGGATCCTGTGATTTTGTCCACCGGGATTACTTATGATAGAGAGAGCATCGAGAAGTGGATTGAGGGTGGGAATTTTTCTTGTCCTGTGACGAAACAGGATTTGATGAGTTTTGACCTAATCCCTAATCATACCTTGAGGAGGATGATCCAAGATTGGTGCGTTGCGAATCATTCTTATGGAATCGAGCGGATTCCAACACCGCGGATTCCAGTCACGCCGTATGAAGTTAATGACGTTTGTTCGAGAATCGCCGTCGCGACTCAAAGGGGCGATTCGAAGAGATGCAGTGAATTGGTGGGTAAGATCAGGAATTGGGCGAGAGAGAGCGAGAGGAATCGGAGGTGCGTTGTGAATGGAGGAACTGGGATTGTTCTAGCAGCTTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTGTTGGTTTTGGTATGTGTATTCCCAATCTCCATTGAAGGGTTATCCAAGCTCGGATCTGCGGATTCTTTGAAATGCTTGGTTTCCTTCTTAATGGGGAAAAATCTTTCTCCAAAACAGAACGCAGTTTTTGTTCTGAAAGAACTGCTTCTGGTTGATCAAAGATACGTCGATTCATTGGCTGCCATTGAAGGAGTATCCGAAGCTTTAGTAAGCATCATAAGGGAGCCTCTTTGCCCTTCAGCTACAAAATCATCCCTTACAGCCATTTTCTACATGATTTTACCATCAGAAATCAGCGAGAAAATGACATTGAAATTCATGGAACTGGGCTTGGTCTCTGAGCTGCTAGATTTCCTTGTAGATGCAGAGAAAAGCCTGTGTGAGAAAGCGTTGGGAGTATTGGATGGAATCTGTGATTTTAAACAAGGAAGAGAGAAGCTATACCAAAATGCACTAACAATTCCATTGTTAGTCAAGAAGATCCTAAGAGTATCAGAGGTTGCCTCTGAGTATTGTCTGTCAATATTATTGAAGCTTTGTAAGAGTGGAGAGAAGGGTGAGGATGAGGCGAGGGTGGAAGCTGCTCAACTGGGTGCTTTCCAGAAGATAATTGTTCTTTTGCAGGTTGGTTGCGGTGGTGACATGAAAGACAAGGTCACTGAGATGTTGAAATTGTTGAATCTTTACAAGGATAGGTTAGATTGTATTGATTCATCCATGCATTTTAAGTTCTTGAAGAAATCATTCTGA 1332 42.87 MFLSWRRSKLGFLPKLKKEHLPGVDSGSEIVIPSHFLCPISLDLMKDPVILSTGITYDRESIEKWIEGGNFSCPVTKQDLMSFDLIPNHTLRRMIQDWCVANHSYGIERIPTPRIPVTPYEVNDVCSRIAVATQRGDSKRCSELVGKIRNWARESERNRRCVVNGGTGIVLAASFEHFAGVSIEKHVGLLEEILLVLVCVFPISIEGLSKLGSADSLKCLVSFLMGKNLSPKQNAVFVLKELLLVDQRYVDSLAAIEGVSEALVSIIREPLCPSATKSSLTAIFYMILPSEISEKMTLKFMELGLVSELLDFLVDAEKSLCEKALGVLDGICDFKQGREKLYQNALTIPLLVKKILRVSEVASEYCLSILLKLCKSGEKGEDEARVEAAQLGAFQKIIVLLQVGCGGDMKDKVTEMLKLLNLYKDRLDCIDSSMHFKFLKKSF 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12494606 12495937 - Cp4.1LG02g16950.1 Cpe02g01449 465398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01449 443 SUPERFAMILY ARM repeat 213 420 IPR016024 -
Cpe02g01449 443 PANTHER WDSAM1 PROTEIN 26 443 IPR045185 GO:0061630
Cpe02g01449 443 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 26 443 - -
Cpe02g01449 443 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Cpe02g01449 443 Gene3D - 127 419 IPR011989 -
Cpe02g01449 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 109 IPR013083 -
Cpe02g01449 443 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Cpe02g01449 443 SUPERFAMILY RING/U-box 29 108 - -
Cpe02g01449 443 CDD RING-Ubox_PUB 36 78 IPR045210 -
Cpe02g01449 443 Pfam U-box domain 32 102 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00435 Cpe-Chr1:2508832 Cpe02g01449 Cpe-Chr2:12494606 2.71E-69 dispersed
Cpe01g00946 Cpe-Chr1:5601525 Cpe02g01449 Cpe-Chr2:12494606 1.16E-134 dispersed
Cpe02g01449 Cpe-Chr2:12494606 Cpe10g01029 Cpe-Chr10:5977745 5.03E-56 dispersed
Cpe02g01449 Cpe-Chr2:12494606 Cpe01g00066 Cpe-Chr1:401252 2.70E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01449 - - csv:101220059 781.556