Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01458 ATGGCGACGAAGACCGACGGAATCCAAGAGGAAGAAATTTCAAAGCTCGAGGAAGGCACTCTCGGAACCTGCGTCGCGCGTCTCCGTCCATCGTCTTGGGTTGCTATCATCCAAAAGGTTATTGCGGAGGTGATTGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGTGGTGAACAAAATTTACGGATCAGTGACGTTCCCGGGAATCTGCGTGGTTTGGGGATTGATTGTGATGGTTATGGTGTATTCGTTGGGACACATCTCTGGAGCGCACTTCAACCCTTCTGTTACCATCACATTCGCCATTTTTCGTCGCTTCCCCTTTTGTCAGGTTATTGCGGAGGTGATTGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGTGGTGAACAAAATTTACGGATCAGTGACGTTCCCGGGAATCTGCGTGGTTTGGGGATTGATTGTGATGGTTATGGTGTATTCGTTGGGACACATCTCTGGAGCGCACTTCAACCCTTCTGTTACCATCACATTCGCCATTTTTCGTCGCTTCCCCTTTTGTCAGGTTCCGATATACATAGGAGCTCAAGTAGCAGGGTCCCTTCTTGCAAGCACCACACTGGACCTATTGTTTGAAGTGACCCCGGAAGCCTTCTTTGGGACAGTGCCGGCAGGATCCGATGTCCAATCTTTCGTCCTTGAAATCATCATCACCTTCCTCTTGCTGTTAGTCGTCTCTGGTGTCTCCACTGATCACAGAGCTGTTGGAGAATTGGCGGGAATTGTTGTTGGAATGACTGTTCTGTTGAATGTCTTCGTGGCTGGGCCGATTTCAGGAGCTTCCATGAATCCAGCTAGGACCATTGGACCTGCGATAGTGAAGGGACAGTTCAAAGGATTATGGGTTTACATGGTTGGGCCGTTGATCGGAGCTATTGCCGGAGCATTTACTTACAACCTGATGAGATTCACAGACAAGCCGTTGTCGGAGATCACCAAAAACAGCTCATTCCTCAATCGCTGCCAAAAATCATAA 1032 49.32 MATKTDGIQEEEISKLEEGTLGTCVARLRPSSWVAIIQKVIAEVIGTYFVIFTGCGAVVVNKIYGSVTFPGICVVWGLIVMVMVYSLGHISGAHFNPSVTITFAIFRRFPFCQVIAEVIGTYFVIFTGCGAVVVNKIYGSVTFPGICVVWGLIVMVMVYSLGHISGAHFNPSVTITFAIFRRFPFCQVPIYIGAQVAGSLLASTTLDLLFEVTPEAFFGTVPAGSDVQSFVLEIIITFLLLLVVSGVSTDHRAVGELAGIVVGMTVLLNVFVAGPISGASMNPARTIGPAIVKGQFKGLWVYMVGPLIGAIAGAFTYNLMRFTDKPLSEITKNSSFLNRCQKS 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12568479 12572678 + Cp4.1LG02g16830.1 Cpe02g01458 465407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01458 343 ProSitePatterns MIP family signature. 168 176 IPR022357 -
Cpe02g01458 343 TIGRFAM MIP: MIP family channel proteins 116 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe02g01458 343 PRINTS Major intrinsic protein family signature 187 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe02g01458 343 PRINTS Major intrinsic protein family signature 300 320 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe02g01458 343 PRINTS Major intrinsic protein family signature 232 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe02g01458 343 PRINTS Major intrinsic protein family signature 263 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe02g01458 343 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe02g01458 343 PRINTS Major intrinsic protein family signature 150 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe02g01458 343 CDD MIP 113 320 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe02g01458 343 Gene3D Glycerol uptake facilitator protein. 114 334 IPR023271 -
Cpe02g01458 343 Gene3D Glycerol uptake facilitator protein. 5 113 IPR023271 -
Cpe02g01458 343 Pfam Major intrinsic protein 113 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe02g01458 343 PANTHER AQUAPORIN NIP2-1 113 333 IPR034294 -
Cpe02g01458 343 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Cpe02g01458 343 SUPERFAMILY Aquaporin-like 113 331 IPR023271 -
Cpe02g01458 343 PANTHER AQUAPORIN NIP4-1-RELATED 113 333 - -
Cpe02g01458 343 PANTHER AQUAPORIN NIP4-1-RELATED 28 115 - -
Cpe02g01458 343 SUPERFAMILY Aquaporin-like 36 115 IPR023271 -
Cpe02g01458 343 PANTHER AQUAPORIN NIP2-1 28 115 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01458 Cpe-Chr2:12568479 Cpe19g01091 Cpe-Chr19:7401374 6.60E-33 dispersed
Cpe02g01458 Cpe-Chr2:12568479 Cpe10g00126 Cpe-Chr10:808572 2.50E-33 transposed
Cpe02g01458 Cpe-Chr2:12568479 Cpe19g01089 Cpe-Chr19:7398581 9.83E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01458 K09874 - csv:101215315 387.497