Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01546 ATGGAGACTGGTTATGGAGGTGAAGCTTGTCAATTGTATGGTATGGGGTCTAGGGATTTGAGGGCTGCTGTTGGGAAGAAGAGCCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTTTTTATTGCTAGGCCTTTAAATTTGGTGGAGTCTGATCATTTAGGTAGCCAAGTTTTTCCAATTGTCTCTGGGATTCCCTTGACCGGTGGCTCGTCGAACAGTTCGTCGTCGTGTTCTGATGAAGCTAATACGGGGATCGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGATAATGTTATGGAAGATGAGAATCTTAATGATGAAGCTCGTAGTTTGAGTTTGAAGGTTGGTGGAAATGGTTGTCAAATTGTTGAGAAAGAAGCAGGGAATTGGGAAGGAAGTAGTGGCAAGAAGACTAAACTAAGCGGGGGAAACTCGAGTCGTGCGGTTTGCCAGGTAGAGGACTGTGGAGCTGATCTTAGCAATGCTAAAGATTATCACAGAAGACATAAAGTCTGTGAAATGCATTCGAAGGCGAGTAATGCGCTCGTTGCTAACGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAGGAGTTCGATGAAGGAAAACGGAGTTGTCGAAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAGAACAATCCTGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTCTAATGCGAATACTTGCAAATTTGCACTCAATTCTCGTCGTTTTCTTAGCTATGCTAGTCCTTGATTTACCCTTCCTTACTGGCTGCCCCGAATTGAGTTTCTACTCTTATGTGTTATTTGGTGTAGCCAATGGATCAAACAAGACCACAGACCAAGATCTTCTTTCGAATCTTATACGGATCCTTGCCTGTCAATCTGGTGAGCACGGCGGTAAAAACCGATCTGGGATTCTGCATGAACCTCAGAATTTGCTGAACGGGGCTAAATCCGATCTAGTTTGTACTTTTCTCTCAAATGGTCCTCAGGTACCTTTGAGATCTTCTAAACAACCTGACACGATACCGATATCCGAGACACCAGTACAAGCAACTGTTCGAGGTGGAGATACACCAGCTATATCTTCTGTAAAACCAAGCACTTCAAACAGCCCTCCCGCGTATTCAGAAATCAGGGACAATACGGTTGGACAGTGCAAAATGATGAACTTTGATTTGAACGATGTTTATGTCGACTCGGACGATGGCATGGAAGACATTGAGAGACAAGCACGCCCAGTAGTGCATATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCTCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCATTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGTACAGATCGGATCATTTTGAAATTGTTCGGGAAAGCACCAAATGATTTTCCTCACGTTTTACGAGCTCAGGTTCTCAATTGGTTATCACATAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGACAGACTGAGGCTGCATGGAACGATCTTTGCCATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCCGACGAAGCTTTCTGGAGAACTGGATGGGTTTACGTTCGGGTTCAGCATCAAATAGCTTTCGTTTATCATGGTCAGGTCGTAGTCGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTCGTATCACAAGCGTAAACCCCGTTGCCGTTCCTTTATCTAAGAAGGCTATATTTTCGGTTAAAGGAATAAACTTGACCCGATCGACAACTAGGTTACTATGTGCAATTGAAGGGACATATCTTACTCAGGAAGCTTCAGATGATTCAACAGAAAGTGATGATAACTCAAACGCACGAGACGACAGCCAATGCGTAACCTTTTCTTGCTCGATTCCTGTCGTCTATGGAAGGGGATTCATCGAGGCTGAAGATGATGGTTTGAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAAGAGGATGTTTGTACAGAGATCTGCACACTTCAAAGTGCTTTAGAATTTACTGAAATATGTTCAAATTCTGGGGAAACTACGGAGCTGGAAGGAAGGAGTAATGCAATGGAGTTTATCCATGAAATTGGTTGGCTGTTTCATAGAAATCACTTGAAGTCTAGATTAGGTAACTTGGATCCTAACGAAAATCTCTTTTCGCTGTCACGGTTCAAGTGGCTCGTCGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTCTTGGATGTCCTTCTTGATGGGACTGTGGACTTTGGAGATCACCCGTCGTTGAATTTTGCGTTGACCGAAATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGCCGGTCGTTGGTCGAGCTCCTTTTGGGTTACCCTTCAAAAGTGAAGGACTCATCAAGTTCTGATGGATCGACCAGTAGCTTCCTGTTTAGACCTGATGTCGTTGGCCCGGCCGGGTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCATGGATGTTCTCGATGCGTTAACTAATGATCCGGGAATGGTAGGAGTTGAGGCTTGGAAGAGTGCTCGAGACGTCACAGGCTCGACACCTGAGGATTACGCTCGTTTGCGTGGCCATTACTCGTATATTCGTCTCGTCCAGAGGAAAATCAACAAGAGATCTTCAGCTGGGCATGTGGTGCTGGACATTCCTAGTACTGTCTCAGATGGTAGCTGGAACCAGAAGCAGAACACTGATATGATGACCTCCTCCAGGTTTGAGATTGGTAGGACAAAACTAAAGCATTCTCAGCAGGATTGCAGCCGTTGTGTTATGAAACCGAGCGGTTTCGGAACGTCGTCTAAAGCGTCTCTGGTCTACCGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTGTGTGTGTGTGTGGCGCTCTTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCGTTCCGATGGGAACTACTAGAATACGGTACTAGTTAG 3117 45.17 METGYGGEACQLYGMGSRDLRAAVGKKSLEWDLNDWKWDGDLFIARPLNLVESDHLGSQVFPIVSGIPLTGGSSNSSSSCSDEANTGIEKGKREVEKRRRDNVMEDENLNDEARSLSLKVGGNGCQIVEKEAGNWEGSSGKKTKLSGGNSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKNNPDNVVNGNSPPDEQTSSYLLLTLMRILANLHSILVVFLAMLVLDLPFLTGCPELSFYSYVLFGVANGSNKTTDQDLLSNLIRILACQSGEHGGKNRSGILHEPQNLLNGAKSDLVCTFLSNGPQVPLRSSKQPDTIPISETPVQATVRGGDTPAISSVKPSTSNSPPAYSEIRDNTVGQCKMMNFDLNDVYVDSDDGMEDIERQARPVVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAHSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLNWLSHSPTEIESYIRPGCVVLTIYLRQTEAAWNDLCHDLSTSLNRLLDVSDEAFWRTGWVYVRVQHQIAFVYHGQVVVDTSLPLRNKNYCRITSVNPVAVPLSKKAIFSVKGINLTRSTTRLLCAIEGTYLTQEASDDSTESDDNSNARDDSQCVTFSCSIPVVYGRGFIEAEDDGLSSSSFPFIVAEEDVCTEICTLQSALEFTEICSNSGETTELEGRSNAMEFIHEIGWLFHRNHLKSRLGNLDPNENLFSLSRFKWLVEFSMDHDWCAVVKKLLDVLLDGTVDFGDHPSLNFALTEMSLLHRAVRKNSRSLVELLLGYPSKVKDSSSSDGSTSSFLFRPDVVGPAGLTPLHIAAGKDDSMDVLDALTNDPGMVGVEAWKSARDVTGSTPEDYARLRGHYSYIRLVQRKINKRSSAGHVVLDIPSTVSDGSWNQKQNTDMMTSSRFEIGRTKLKHSQQDCSRCVMKPSGFGTSSKASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLEYGTS 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13114807 13120500 - Cp4.1LG02g15940.1 Cpe02g01546 465495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01546 1038 Gene3D - 763 926 IPR036770 -
Cpe02g01546 1038 MobiDBLite consensus disorder prediction 449 484 - -
Cpe02g01546 1038 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677|GO:0005634
Cpe02g01546 1038 MobiDBLite consensus disorder prediction 375 402 - -
Cpe02g01546 1038 MobiDBLite consensus disorder prediction 71 99 - -
Cpe02g01546 1038 Pfam SBP domain 155 228 IPR004333 GO:0003677
Cpe02g01546 1038 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677
Cpe02g01546 1038 MobiDBLite consensus disorder prediction 219 240 - -
Cpe02g01546 1038 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1037 - -
Cpe02g01546 1038 MobiDBLite consensus disorder prediction 71 85 - -
Cpe02g01546 1038 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1037 IPR044817 GO:0003677
Cpe02g01546 1038 SUPERFAMILY Ankyrin repeat 811 919 IPR036770 -
Cpe02g01546 1038 MobiDBLite consensus disorder prediction 385 402 - -
Cpe02g01546 1038 Gene3D - 146 216 IPR036893 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01546 Cpe03g00825 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00006 Cpe-Chr2:41059 Cpe02g01546 Cpe-Chr2:13114807 2.54E-38 dispersed
Cpe02g01546 Cpe-Chr2:13114807 Cpe09g00953 Cpe-Chr9:8542517 6.82E-34 dispersed
Cpe02g01546 Cpe-Chr2:13114807 Cpe03g00825 Cpe-Chr3:5142997 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49105 PF03110 SBP 9.60E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01546 - - csv:101203103 1690.24