Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01552 ATGGCGGCTGCAGCTACAACAAGCGTTGTGCCGCCGAATCGGCGGCGAGCGATTACCGCGCCGGAAGATAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGTATTAAGGATGATCTTCTCCGTGGAATATATGCATATGGTTTTGAAAAACCCTCGGCCATTCAGCAAAGAGCCGTGAGGCCTATTATCGATGGTCGAGATGTCATTGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCTCCAGCAGAGAGGTGCAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCAACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGAACATTGCGTACTAGAGCCATTAAGTTGTTAGTTCTGGATGAATCTGATGAGATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATACCGATATCTCCCACCAGAACTTCAGGTTGAATGGCTGACTGAGAAGATGCGCAGCAATAATTTCACAGTTTCACATATGCATGGAGACATGCCTCAAAAGGAAAGAGATGCAATTATGGGGGAGTTTCGATCGGGAACGACCCGTGTCCTAATCACTACTGATGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCTGGTCGGTTTGGGCGCAAGGGTGTTGCTATCAACTTCGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAACAGTACTACAGTACCCAGATTGATGAGATGCCCATGAACGTTGCTGATTTGATTTAG 975 45.85 MAAAATTSVVPPNRRRAITAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIDGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13173787 13178152 - Cp4.1LG02g15800.1 Cpe02g01552 465501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01552 324 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 179 324 IPR001650 -
Cpe02g01552 324 Gene3D - 210 323 IPR027417 -
Cpe02g01552 324 PANTHER BNAC03G41130D PROTEIN 213 317 - -
Cpe02g01552 324 PANTHER BNAC03G41130D PROTEIN 22 213 - -
Cpe02g01552 324 SMART helicmild6 214 285 IPR001650 -
Cpe02g01552 324 CDD SF2_C_DEAD 212 294 - -
Cpe02g01552 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 217 IPR027417 -
Cpe02g01552 324 Pfam Helicase conserved C-terminal domain 213 285 IPR001650 -
Cpe02g01552 324 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Cpe02g01552 324 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 213 317 - -
Cpe02g01552 324 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Cpe02g01552 324 Gene3D - 43 209 IPR027417 -
Cpe02g01552 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 322 IPR027417 -
Cpe02g01552 324 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 213 - -
Cpe02g01552 324 Pfam DEAD/DEAH box helicase 62 208 IPR011545 GO:0003676|GO:0005524
Cpe02g01552 324 SMART ultradead3 56 237 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01552 Cpe-Chr2:13173787 Cpe11g00363 Cpe-Chr11:1999303 2.32E-105 dispersed
Cpe02g01552 Cpe-Chr2:13173787 Cpe03g00831 Cpe-Chr3:5222609 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01552 K13025 - csv:101222664 407.912