Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01577 ATGTGCGGTGGTCCAGAAAAATCCAATTCCGCATCTACTACTACATCAGCAAGCTCACCTAATCCCAAAGACATGAGTCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCATCAGACAACGATGCCGAAGGCTTCAAGCGTTTGATGGAGTCTGATTTGTTATCACTAAACAAGTCTGGGCTCTGGTATGTTCGCCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGAACGCCCCTGATGGTTGCTGCAACATATGGTTGTGTTGATGTTCTGAAACTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAAAGCACTGCTCTCCACTGTGCTACCTCCAGTGGATCTGTGAATGCAGTCGATATTGTTGATTTACTTTTGTCTGCTGGTGCTGACCCAAACGCCAAGGATATTAATGGCAATCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAATGTTCAGGCTCGAGGAACTTCTCAATAATCATTCAAATGGGTCCATGGATGTTTCCTGTTTACGTTTGTCAATCAAAATGCCTGATTCAGGGTCACCACCACTTTCCTCATCGTTGGAGGATGAATTTCCATCTCCACCCAAGTCGATGTCTTCTCCCAAGTTTACTGATGGGTTTGCAACTACAAAGGAAAAGAAAGAATATCCAATTGATCCATCACTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGCATGTTCTCTTTCAAGGTGAGGCCTTGTTCTCGGGCGTATTCCCATGATTGGACTGAGTGTCCTTTCGTCCACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGAAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAAGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTTCACCCAGCTCAGTATCGAACTCGTCTTTGCAAGGATGGCACGAGTTGCAATAGGCGGGTCTGTTTCTTTGCTCACACAAATGAAGAACTAAGGCCATTATATGTGTCTACTGGATCTGCTGTTCCTTCCCCACGATCGATTGGGTCTGCTCCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTGCCTGGATCCCCTTCATCAGTGTCAGCTTTATCTCCATCTCCATTTGCTCAGTCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAACCAAATGTACCAACTCTTCATCTTCCAGGAAGTAACCTTCAATCCAGTCGGTTAAGGTCATCTCTGAATGCCAGGGATATGCCTCTAGAGGATTTTAATGTCTTGCCAAACTTTGACAACCAGCCACGAATTTTGAATGATATTAACTGTTTCTCTCAGCCTCGTCCGAGTGCCATTTCTGTGAGCCGATCTGGCTGGACCCAAACTCTAACTCCTAACAATCTCGAAGAGCTATTTTCTAATGAAATCCCTTTGTCTCCCCGATTCTCTGATCCAGCCACCAATGTCTTTTCCCCTACTCGCAAATCGACATTACTAAACCAATTTCAGCAGCAGCAGCAGAACATGTTATCACCTATAAATACAAGCATTATGTCTCCTAAGACTGTTGATCAGCCTTTGTTGCAGGCCTCTTTTGGAGTGTCATCGCCTGGAAGGATGTCGCCTAGAAGCACAGAGCCACTGTCTCCAATGGGATCTAGGTTTTCTGCTTTTGTACAGCGTGAAAAGCAACATCTCCGCAGTCTCAGCTCAAGGGAGCTTGGATCCAATGTCCCAAGCTCGTTGATTGGATCTCCTGTCAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGCGGATTGGTCAGTTGGTAAGAATGAACTGGGTCAACTGCGAAGATCATCTTCTTTCGAGATCGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCGCCTGAGATGCTAAGAGAGAAGTCGGCAGCGCCCAGGATGGGTGGTGCTGCAGCATCCGGTGAGGGTCTAACTTCTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2178 45.64 MCGGPEKSNSASTTTSASSPNPKDMSHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLLSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNAKDINGNRPVDVIFVHPKLQKQNTMFRLEELLNNHSNGSMDVSCLRLSIKMPDSGSPPLSSSLEDEFPSPPKSMSSPKFTDGFATTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFAQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDFNVLPNFDNQPRILNDINCFSQPRPSAISVSRSGWTQTLTPNNLEELFSNEIPLSPRFSDPATNVFSPTRKSTLLNQFQQQQQNMLSPINTSIMSPKTVDQPLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQHLRSLSSRELGSNVPSSLIGSPVNSLPKWGSPNGKADWSVGKNELGQLRRSSSFEIGNNGEEPDLSWVQSLVKESPPEMLREKSAAPRMGGAAASGEGLTSTKSQLESTDHSVIGAWLEQMQLDQLVV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13312215 13316598 + Cp4.1LG02g15700.1 Cpe02g01577 465526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01577 725 ProSiteProfiles Ankyrin repeat profile. 116 151 IPR002110 GO:0005515
Cpe02g01577 725 ProSiteProfiles Ankyrin repeat region circular profile. 116 150 - -
Cpe02g01577 725 MobiDBLite consensus disorder prediction 1 25 - -
Cpe02g01577 725 Gene3D - 33 184 IPR036770 -
Cpe02g01577 725 Pfam Ankyrin repeats (3 copies) 73 150 IPR002110 GO:0005515
Cpe02g01577 725 PRINTS Ankyrin repeat signature 82 97 IPR002110 GO:0005515
Cpe02g01577 725 PRINTS Ankyrin repeat signature 135 149 IPR002110 GO:0005515
Cpe02g01577 725 SMART ANK_2a 81 111 IPR002110 GO:0005515
Cpe02g01577 725 SMART ANK_2a 116 148 IPR002110 GO:0005515
Cpe02g01577 725 PANTHER UNKEMPT FAMILY MEMBER 18 723 IPR045234 -
Cpe02g01577 725 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Cpe02g01577 725 MobiDBLite consensus disorder prediction 201 226 - -
Cpe02g01577 725 Gene3D - 297 360 - -
Cpe02g01577 725 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Cpe02g01577 725 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 18 723 - -
Cpe02g01577 725 MobiDBLite consensus disorder prediction 1 26 - -
Cpe02g01577 725 MobiDBLite consensus disorder prediction 673 703 - -
Cpe02g01577 725 MobiDBLite consensus disorder prediction 200 226 - -
Cpe02g01577 725 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Cpe02g01577 725 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Cpe02g01577 725 SUPERFAMILY Ankyrin repeat 80 161 IPR036770 -
Cpe02g01577 725 MobiDBLite consensus disorder prediction 402 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01577 Cpe-Chr2:13312215 Cpe08g01381 Cpe-Chr8:9920910 0 dispersed
Cpe02g01577 Cpe-Chr2:13312215 Cpe03g00864 Cpe-Chr3:5448764 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49107 PF12796 Ank_2 8.70E-11 CL0465 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01577 - - csv:101205376 1288.09