Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g01577 | ATGTGCGGTGGTCCAGAAAAATCCAATTCCGCATCTACTACTACATCAGCAAGCTCACCTAATCCCAAAGACATGAGTCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCATCAGACAACGATGCCGAAGGCTTCAAGCGTTTGATGGAGTCTGATTTGTTATCACTAAACAAGTCTGGGCTCTGGTATGTTCGCCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGAACGCCCCTGATGGTTGCTGCAACATATGGTTGTGTTGATGTTCTGAAACTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAAAGCACTGCTCTCCACTGTGCTACCTCCAGTGGATCTGTGAATGCAGTCGATATTGTTGATTTACTTTTGTCTGCTGGTGCTGACCCAAACGCCAAGGATATTAATGGCAATCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAATGTTCAGGCTCGAGGAACTTCTCAATAATCATTCAAATGGGTCCATGGATGTTTCCTGTTTACGTTTGTCAATCAAAATGCCTGATTCAGGGTCACCACCACTTTCCTCATCGTTGGAGGATGAATTTCCATCTCCACCCAAGTCGATGTCTTCTCCCAAGTTTACTGATGGGTTTGCAACTACAAAGGAAAAGAAAGAATATCCAATTGATCCATCACTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGCATGTTCTCTTTCAAGGTGAGGCCTTGTTCTCGGGCGTATTCCCATGATTGGACTGAGTGTCCTTTCGTCCACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGAAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAAGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTTCACCCAGCTCAGTATCGAACTCGTCTTTGCAAGGATGGCACGAGTTGCAATAGGCGGGTCTGTTTCTTTGCTCACACAAATGAAGAACTAAGGCCATTATATGTGTCTACTGGATCTGCTGTTCCTTCCCCACGATCGATTGGGTCTGCTCCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTGCCTGGATCCCCTTCATCAGTGTCAGCTTTATCTCCATCTCCATTTGCTCAGTCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAACCAAATGTACCAACTCTTCATCTTCCAGGAAGTAACCTTCAATCCAGTCGGTTAAGGTCATCTCTGAATGCCAGGGATATGCCTCTAGAGGATTTTAATGTCTTGCCAAACTTTGACAACCAGCCACGAATTTTGAATGATATTAACTGTTTCTCTCAGCCTCGTCCGAGTGCCATTTCTGTGAGCCGATCTGGCTGGACCCAAACTCTAACTCCTAACAATCTCGAAGAGCTATTTTCTAATGAAATCCCTTTGTCTCCCCGATTCTCTGATCCAGCCACCAATGTCTTTTCCCCTACTCGCAAATCGACATTACTAAACCAATTTCAGCAGCAGCAGCAGAACATGTTATCACCTATAAATACAAGCATTATGTCTCCTAAGACTGTTGATCAGCCTTTGTTGCAGGCCTCTTTTGGAGTGTCATCGCCTGGAAGGATGTCGCCTAGAAGCACAGAGCCACTGTCTCCAATGGGATCTAGGTTTTCTGCTTTTGTACAGCGTGAAAAGCAACATCTCCGCAGTCTCAGCTCAAGGGAGCTTGGATCCAATGTCCCAAGCTCGTTGATTGGATCTCCTGTCAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGCGGATTGGTCAGTTGGTAAGAATGAACTGGGTCAACTGCGAAGATCATCTTCTTTCGAGATCGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCGCCTGAGATGCTAAGAGAGAAGTCGGCAGCGCCCAGGATGGGTGGTGCTGCAGCATCCGGTGAGGGTCTAACTTCTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG | 2178 | 45.64 | MCGGPEKSNSASTTTSASSPNPKDMSHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLLSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNAKDINGNRPVDVIFVHPKLQKQNTMFRLEELLNNHSNGSMDVSCLRLSIKMPDSGSPPLSSSLEDEFPSPPKSMSSPKFTDGFATTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFAQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDFNVLPNFDNQPRILNDINCFSQPRPSAISVSRSGWTQTLTPNNLEELFSNEIPLSPRFSDPATNVFSPTRKSTLLNQFQQQQQNMLSPINTSIMSPKTVDQPLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQHLRSLSSRELGSNVPSSLIGSPVNSLPKWGSPNGKADWSVGKNELGQLRRSSSFEIGNNGEEPDLSWVQSLVKESPPEMLREKSAAPRMGGAAASGEGLTSTKSQLESTDHSVIGAWLEQMQLDQLVV | 725 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 13312215 | 13316598 | + | Cp4.1LG02g15700.1 | Cpe02g01577 | 465526 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g01577 | 725 | ProSiteProfiles | Ankyrin repeat profile. | 116 | 151 | IPR002110 | GO:0005515 | |
Cpe02g01577 | 725 | ProSiteProfiles | Ankyrin repeat region circular profile. | 116 | 150 | - | - | |
Cpe02g01577 | 725 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cpe02g01577 | 725 | Gene3D | - | 33 | 184 | IPR036770 | - | |
Cpe02g01577 | 725 | Pfam | Ankyrin repeats (3 copies) | 73 | 150 | IPR002110 | GO:0005515 | |
Cpe02g01577 | 725 | PRINTS | Ankyrin repeat signature | 82 | 97 | IPR002110 | GO:0005515 | |
Cpe02g01577 | 725 | PRINTS | Ankyrin repeat signature | 135 | 149 | IPR002110 | GO:0005515 | |
Cpe02g01577 | 725 | SMART | ANK_2a | 81 | 111 | IPR002110 | GO:0005515 | |
Cpe02g01577 | 725 | SMART | ANK_2a | 116 | 148 | IPR002110 | GO:0005515 | |
Cpe02g01577 | 725 | PANTHER | UNKEMPT FAMILY MEMBER | 18 | 723 | IPR045234 | - | |
Cpe02g01577 | 725 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 302 | 322 | IPR000571 | GO:0046872 | |
Cpe02g01577 | 725 | MobiDBLite | consensus disorder prediction | 201 | 226 | - | - | |
Cpe02g01577 | 725 | Gene3D | - | 297 | 360 | - | - | |
Cpe02g01577 | 725 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 324 | IPR000571 | GO:0046872 | |
Cpe02g01577 | 725 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 | 18 | 723 | - | - | |
Cpe02g01577 | 725 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cpe02g01577 | 725 | MobiDBLite | consensus disorder prediction | 673 | 703 | - | - | |
Cpe02g01577 | 725 | MobiDBLite | consensus disorder prediction | 200 | 226 | - | - | |
Cpe02g01577 | 725 | SMART | c3hfinal6 | 297 | 323 | IPR000571 | GO:0046872 | |
Cpe02g01577 | 725 | SMART | c3hfinal6 | 332 | 355 | IPR000571 | GO:0046872 | |
Cpe02g01577 | 725 | SUPERFAMILY | Ankyrin repeat | 80 | 161 | IPR036770 | - | |
Cpe02g01577 | 725 | MobiDBLite | consensus disorder prediction | 402 | 422 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g01577 | Cpe-Chr2:13312215 | Cpe08g01381 | Cpe-Chr8:9920910 | 0 | dispersed | |
Cpe02g01577 | Cpe-Chr2:13312215 | Cpe03g00864 | Cpe-Chr3:5448764 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49107 | PF12796 | Ank_2 | 8.70E-11 | CL0465 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g01577 | - | - | csv:101205376 | 1288.09 |