Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01596 ATGGAGTTGGGTTTGAGGCTTGGAGATCAACAACAAACCCACAGCCACAACCCTAAGCTTCTTCCCTCTTTTTTTCATCCTCCGCCCATTCTTCACCTCGCTCTTCTTCCTCCTACTCCTACTCCTACTCCAGACGGCGGCGGTGGGGAATCTCCGAGAAACCCATATCTGTGCTCCTCGTTGGAGCTGGGATTGTATGAAGTGGAAGATCATCAGGGGAATAGCGACAGAGGTTGCTCTAGAGGTAGCGATGAAGATGATCAAATTTTGGGTTCCAGAAAGAAACTGCGGCTTTCCAGAGAACAGTCGGCGTTCCTTGAAGAGAGCTTCAAAGATCATCACACACTTTACCCTAAGCAAAAGGTAGAACTTGCAAGAAGGCTGAATCTTCGTCCACGCCAAGTAGAGGTGTGGTTTCAAAACAGACGAGCAAGAACCAAGCTGAAGCAAACCGAAGTTGACTGTGAGTACTTGAAAAACTGTTGCCAAACACTAACCCAACAAAACAGGAAGCTTCGAAAGGAGCTTCAAGATTTAAGAGCTTTGAAAACCACAGATTCTCTCTTCATGCATTCCCCCGCCACCACTCTCACCATGTGTGCGTCTTGTGAACGCGCCGCCGTTCTTCACCCGCTGAACTCCAAGGCTTCTGGGTTTTCGTTTACTACAAATGGGTCCTTTCCATTTTCACCAACTGATCCTTCTACACCCAAGAATTAG 720 47.78 MELGLRLGDQQQTHSHNPKLLPSFFHPPPILHLALLPPTPTPTPDGGGGESPRNPYLCSSLELGLYEVEDHQGNSDRGCSRGSDEDDQILGSRKKLRLSREQSAFLEESFKDHHTLYPKQKVELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCQTLTQQNRKLRKELQDLRALKTTDSLFMHSPATTLTMCASCERAAVLHPLNSKASGFSFTTNGSFPFSPTDPSTPKN 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13425334 13427344 - Cp4.1LG02g15420.1 Cpe02g01596 465545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01596 239 SMART halz 149 192 IPR003106 GO:0006355|GO:0043565
Cpe02g01596 239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 68 226 - -
Cpe02g01596 239 PANTHER - 68 226 - -
Cpe02g01596 239 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Cpe02g01596 239 SUPERFAMILY Homeodomain-like 86 150 IPR009057 -
Cpe02g01596 239 Pfam Homeodomain 93 147 IPR001356 GO:0003677
Cpe02g01596 239 CDD homeodomain 93 150 IPR001356 GO:0003677
Cpe02g01596 239 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Cpe02g01596 239 Gene3D - 97 147 - -
Cpe02g01596 239 SMART HOX_1 91 153 IPR001356 GO:0003677
Cpe02g01596 239 MobiDBLite consensus disorder prediction 31 45 - -
Cpe02g01596 239 Pfam Homeobox associated leucine zipper 149 183 IPR003106 GO:0006355|GO:0043565
Cpe02g01596 239 MobiDBLite consensus disorder prediction 1 54 - -
Cpe02g01596 239 Coils Coil 162 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01596 Cpe-Chr2:13425334 Cpe10g00508 Cpe-Chr10:2995591 2.75E-63 dispersed
Cpe12g00802 Cpe-Chr12:7237738 Cpe02g01596 Cpe-Chr2:13425334 6.17E-70 wgd
Cpe17g00660 Cpe-Chr17:5354676 Cpe02g01596 Cpe-Chr2:13425334 5.49E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49108 PF00046 Homeodomain 3.70E-15 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01596 K09338 - egr:104425500 215.698