Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01617 ATGGCTTCTTCTTATTCCTCTTGGTTGGATTCTGTTGACACTTCTCTGGATCTCAATCTTCATCCTTTAAGATTCACCGGCGAAGCTCCGGTGACGAAGGAGAGGAATTATTTGGATCATGAGAAGGTTTCTGTCAAAGAAGAGACTGGTGCTTTAATGGAGGAACTGAAGAGAGTGAGTGCAGAGAACAAGAAATTAACTGAAATGTTGACTGTTGTGTGTGAAAATTACAACACTTTGAGAGGTCATCTGGTGGATCAAATGAACAAAAATGGAGAAAAGGAAGTTTTTTGTTCGAAGAAGAGGAAATCTGAGAGTAGTAACAATAATAATATGGTTGGAATTAATGGGAATTCTGAGAGTAGTTCAACTGATGAAGAATCATACAAGAAGCCAAAACAGGAAACCATTAACAAATCTTCTAAAACCACTCGAGTTCAAGTCAAAATTGGTGCTTCTGATTCAAATTTGGTTGTTAAAGATGGATATCAATGGCGGAAATACGGCCAGAAGGTCACTAGAGATAATCCTTGTCCTCGAGCTTATTTTAAGTGTTCTTTTGCTCCGACCTGCCCTGTCAAAAAGAAGGTTCAGAGAAGTGTAGAGGATCAGTCGATTCTGGTAGCTACGTACGAAGGTGAACACAACCATCCACAATCTTCTCTGATGGAAGCCACCTCCGGCACTGCTGCTGCTCGCTGCGTCGGCCTAACTCCAGCGGCGCCGACAACTCCCCTCGACTCGAGAAAGCCCAAATCACCCTCTGAAGCTAAAACCACCTCCAGCCCAAGATTTCAGTCGCCGGAAATGCAACAATTTCTTGTTGAACAGATGGCGTCTTCATTGACGAAGGACCCCAATTTCACGGCGGCGCTGGCGGCGGCGATTTCGGGGAAGATTTTCCCACATTAG 912 44.08 MASSYSSWLDSVDTSLDLNLHPLRFTGEAPVTKERNYLDHEKVSVKEETGALMEELKRVSAENKKLTEMLTVVCENYNTLRGHLVDQMNKNGEKEVFCSKKRKSESSNNNNMVGINGNSESSSTDEESYKKPKQETINKSSKTTRVQVKIGASDSNLVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPQSSLMEATSGTAAARCVGLTPAAPTTPLDSRKPKSPSEAKTTSSPRFQSPEMQQFLVEQMASSLTKDPNFTAALAAAISGKIFPH 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13545236 13547323 - Cp4.1LG02g15110.1 Cpe02g01617 465566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01617 303 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe02g01617 303 Pfam WRKY DNA -binding domain 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe02g01617 303 MobiDBLite consensus disorder prediction 255 270 - -
Cpe02g01617 303 MobiDBLite consensus disorder prediction 103 123 - -
Cpe02g01617 303 Gene3D WRKY domain 142 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe02g01617 303 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 6 300 IPR044810 GO:0003700
Cpe02g01617 303 MobiDBLite consensus disorder prediction 99 142 - -
Cpe02g01617 303 MobiDBLite consensus disorder prediction 124 138 - -
Cpe02g01617 303 MobiDBLite consensus disorder prediction 238 270 - -
Cpe02g01617 303 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe02g01617 303 PANTHER TRANSCRIPTION FACTOR 6 300 - -
Cpe02g01617 303 SUPERFAMILY WRKY DNA-binding domain 157 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01617 Cpe03g00910 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00328 Cpe-Chr2:1739851 Cpe02g01617 Cpe-Chr2:13545236 2.03E-60 dispersed
Cpe02g01617 Cpe-Chr2:13545236 Cpe06g00298 Cpe-Chr6:1636222 1.68E-59 dispersed
Cpe02g01617 Cpe-Chr2:13545236 Cpe03g00910 Cpe-Chr3:5849672 1.06E-32 wgd
Cpe02g01617 Cpe-Chr2:13545236 Cpe07g00323 Cpe-Chr7:2088381 1.51E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49110 PF03106 WRKY 4.10E-23 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01617 - - cpep:111787887 579.326