Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01618 ATGGCTGCTGGAGGGCCTAATTCTGGGCAGCCACAGTTCTTTTCTAGGGCTGGAGATGAGAGTTTTTCGCACGCGCCATTGATCGAGAACACAGAAACCGATCAGATTGTTGTTCCTGATAAAAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGATTTCTTGTTTCTATTGCTTATATTGATCCTGGGAATTTTGAAACTGATCTACAATCTGGAGCACAGTACAAGTATGAGTTGCTTTGGATCATATTACTGGCTTCTTGCGCCGCCCTCGTCATACAATCTTTAGCAGCGAATCTAGGAGTTGTCACAGGCAATAACTCTGCTGTAGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCCAAGGTGCAAAATTTCATCCTATGGATCCTTGCTGAAATTGCAATTGTTGCATTTATAGGAACCGCTTTTGCATTGAATATGCTCTTCAGCATTCCTATTTGGTGCGGGGTTCTTCTGACAGGGCTTAGTACACTACTCCTCCTTGCGCTGCAGCAATATGGGATTAGAAAGCTCGAATTTTTGATTGCATTTCTTGTATTGACAATTGCAATTTGCTTCTTTCTGGAGTTGGGCTACGCACAGCCCGATGTCGGAGAAATTTTTTATGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGTGCCACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCTGCACTGGTGCTCTCTAGGAAAATACCCCGATCCATTCCTGGCATCAAGGAAGCTTGCAGATTTTATATGATAGAGAGTGGCTTTGCTCTTTTGGTGGCTTTCTTCATTAACGTGGCCGTCATTTCAGTTAGTGGCGCGGTTTGCAATTCCCCAGATCTAAATAAGGAGGACCAAATGAGCTGCAGTGACTTGGACTTGAATGAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCCAAACTTTTTGCCATTGCTTTGTTAGCATCTGGTCAGAGTTCTACCATAACAGGAACCTATGCAGGACAGTATGTCATGCAGGGGTTTCTCGATTTGAAACTGATGCCATGGATCCGAAACTTTTTAACGCGAAGCTTAGCGATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGCCTTCTGGGGCTGGAAAGTTGATCATTATCTCATCGATTACGATACTGACATGGATCATCGGTTTCCTCATCATGGCTATAAATATATACTACCTCATAACCCGTTTCGTCCACGTGCTTATTCACAGTGATCTCCAACTCGCAGCAGTCATCTTCATAGGGTTACTAGGATTTTCAGGCATGGCATTATATTTAGCTGGAATTGCTTATCTGGTTTTGAGAAAGACCAAGGAGATCACTCATCTCTTGGCACTAACAACAGAAGAAAGTGAGCGATTGAGCATCGAGCCGAGCAAGACATCAGCATATAACCTCCCGAGCGAAGAAACAGTAAGCATGCAATTGCCTCAGAGAATTAGAACAACCAATGATGTAAACTGA 1545 42.98 MAAGGPNSGQPQFFSRAGDESFSHAPLIENTETDQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILLASCAALVIQSLAANLGVVTGNNSAVGKHLAEHCKAEYPKVQNFILWILAEIAIVAFIGTAFALNMLFSIPIWCGVLLTGLSTLLLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAQPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSIPGIKEACRFYMIESGFALLVAFFINVAVISVSGAVCNSPDLNKEDQMSCSDLDLNEASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLMPWIRNFLTRSLAIVPSLIVAIIGGPSGAGKLIIISSITILTWIIGFLIMAINIYYLITRFVHVLIHSDLQLAAVIFIGLLGFSGMALYLAGIAYLVLRKTKEITHLLALTTEESERLSIEPSKTSAYNLPSEETVSMQLPQRIRTTNDVN 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13555504 13563282 + Cp4.1LG02g15220.1 Cpe02g01618 465567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01618 514 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 400 509 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 PRINTS Natural resistance-associated macrophage protein signature 340 359 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 PRINTS Natural resistance-associated macrophage protein signature 368 385 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 PRINTS Natural resistance-associated macrophage protein signature 127 153 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 PRINTS Natural resistance-associated macrophage protein signature 155 174 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 PRINTS Natural resistance-associated macrophage protein signature 180 201 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 PRINTS Natural resistance-associated macrophage protein signature 230 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 PANTHER METAL TRANSPORTER NRAMP1 8 402 - -
Cpe02g01618 514 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 402 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 Hamap Divalent metal cation transporter MntH [mntH]. 32 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 Pfam Natural resistance-associated macrophage protein 67 412 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe02g01618 514 PANTHER METAL TRANSPORTER NRAMP1 400 509 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01618 Cpe03g00911 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01618 Cpe-Chr2:13555504 Cpe05g01175 Cpe-Chr5:8034289 2.24E-90 dispersed
Cpe02g01618 Cpe-Chr2:13555504 Cpe03g00912 Cpe-Chr3:5867368 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01618 K21398 - csv:101209649 852.047