Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01626 ATGGCAAGACCTCAGCAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCAGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCCCTAACAATCTCCCAACCAATCACAACTCGCCACGTCACTCTTTGTCCGCGCCGCCGCCGTCCTCGAACCTTCTAACCCCCACATTGATCGAGAAGTTGCAGAAATGTCGAACGGCTTCTTTCCAAATGGTCAAAAAGCAATTCCCAAACAAAACCCACTTCTCCGACCGGAAATCCGCTCACCCAAGTCGCCCTCACCCCACCAATCTCAACGACGGCTATGGTGCTTCCGGCGTTCACTTACCGGAAACGGACGCCAAGTGGGTCGCCGGCGGCGAGGCTCAGGAGATCGCCCGGCTTGAAGATGATCACGTAGAGCAAATGATCCAAGAATTGCTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATTATCTTAATGATATTGAGTCTACAAATAATTAA 579 50.95 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNLPTNHNSPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSRPHPTNLNDGYGASGVHLPETDAKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNNNNYLNDIESTNN 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13608456 13609212 + Cp4.1LG02g15190.1 Cpe02g01626 465575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01626 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 178 - -
Cpe02g01626 192 MobiDBLite consensus disorder prediction 103 126 - -
Cpe02g01626 192 CDD AP2 6 55 IPR001471 GO:0003700|GO:0006355
Cpe02g01626 192 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cpe02g01626 192 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cpe02g01626 192 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cpe02g01626 192 SUPERFAMILY DNA-binding domain 7 56 IPR016177 GO:0003677
Cpe02g01626 192 SMART rav1_2 7 67 IPR001471 GO:0003700|GO:0006355
Cpe02g01626 192 Pfam AP2 domain 7 52 IPR001471 GO:0003700|GO:0006355
Cpe02g01626 192 ProSiteProfiles AP2/ERF domain profile. 7 65 IPR001471 GO:0003700|GO:0006355
Cpe02g01626 192 PANTHER ETHYLENE RESPONSE FACTOR 1 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01626 Cpe-Chr2:13608456 Cpe11g00306 Cpe-Chr11:1659772 7.93E-48 dispersed
Cpe12g00767 Cpe-Chr12:6986397 Cpe02g01626 Cpe-Chr2:13608456 1.33E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49111 PF00847 AP2 3.50E-11 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01626 - - cmos:111452652 374.4