Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g01726 | ATGATCAAAAGTTTGTTGTTTCAAGCTCAAGCTATGGAGGAAAATTTGTCCAATTTAACTTCAGCTTCAGGTGAAGCTAGTTCCTGCTCCGGCAACCGCTCCGATCAGATTCCGACGAACTACTCCGGTGGCAATTACTTTTCTGCCCCTCCACCACCACCAAAAAGGAAAAGAAACCTCCCCGGAAATCCAGACCCAGATGCGGAGGTGGTAGCTTTATCACCGAAGACGCTGATGGCGACGAATAGATTCGTATGCGAGATCTGCAACAAAGGGTTTCAGAGAGATCAGAATCTTCAGCTTCATAGGAGAGGCCACAATTTGCCATGGAAGCTGAAGCCAAGAGCGAACAAAGAGGTGATAAGGAAGAAGGTGTATGTGTGCCCAGAAACAAGCTGTGTTCATCATGATCCATCGAGGGCTCTCGGGGACTTGACAGGAATCAAGAAGCACTTTAGCAGAAAGCACGGTGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAGGTACGCAGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGACAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTGGCAGAGGAAAGTGCAAGAAGCATTACAGCAAACCCAATACTTATGACCAATAATAACCCTCCACTACTTCCCAATCCAATTTCTTCAATCTCTCACTTCAACTTCCAACCTCAAACCCACTTCAACCCATTGGATATCAACTCGTTTGCCCTAAAAAAAGAGCACCAAAATCCACAAAGCTCAACCAATTTCATTCCCCCGTGGTTGGCTAATCATAATCAAGACCTTAATCACCTCATCATTAACCCTAATCATCTTGGGCAGACGTCTCTTAATCTTCCAACTGCTTCTTCTTCCCCTTCTCCGCACATGTCAGCCACAGCACTTCTGCAGAAAGCAGCTCAAATGGGAGCTACGATGAGCAGCAACAATAATGCAGAGGCACCACACACAATAATCAGGCCCCAACACTCTCAGGATCATCACGTGTCTGATTCGTCTGCCACCACCAATAATGCAACTTGTAATTTTGGCCTTAACTTGTCCTCCTCCTCCTCCTCACGTGACAACCAGAATCAGGTCTTGATGGGTACTGAAGCTGGTCCAGGCCTTTCTCCTGCACTGCCACTCTACAGGAACAAAACACTTGTTCAAACCACTTTCATGAACAACAACAACAACACCACCTTTTCTCCAAGTGCCTTTGAAGGGGCTTCTTTTGAAATAGATGAATTTGGAGGGATGTTGAAGAAAGATGAGATTTTTAACGACAACCCAGCAAGTGAAGGGTTGAGTACAAGAGACTTTTTGGGGCTTAGAGCAATGTCTCACACTGAGTTTTTGAGTAATATTGCAGCTGCTGGTTATGGAAATTGCATCAATGGTGGTGCTGGTCAAACCCCTCCAACTCAAATTCGAAACCAACCCAGCTGGCAAGGTTAG | 1518 | 45.32 | MIKSLLFQAQAMEENLSNLTSASGEASSCSGNRSDQIPTNYSGGNYFSAPPPPPKRKRNLPGNPDPDAEVVALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKPRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSITANPILMTNNNPPLLPNPISSISHFNFQPQTHFNPLDINSFALKKEHQNPQSSTNFIPPWLANHNQDLNHLIINPNHLGQTSLNLPTASSSPSPHMSATALLQKAAQMGATMSSNNNAEAPHTIIRPQHSQDHHVSDSSATTNNATCNFGLNLSSSSSSRDNQNQVLMGTEAGPGLSPALPLYRNKTLVQTTFMNNNNNTTFSPSAFEGASFEIDEFGGMLKKDEIFNDNPASEGLSTRDFLGLRAMSHTEFLSNIAAAGYGNCINGGAGQTPPTQIRNQPSWQG | 505 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 14127921 | 14130790 | - | Cp4.1LG02g17300.1 | Cpe02g01726 | 465675 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g01726 | 505 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 18 | 474 | - | - | |
Cpe02g01726 | 505 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 474 | - | - | |
Cpe02g01726 | 505 | SMART | c2h2final6 | 161 | 181 | IPR013087 | - | |
Cpe02g01726 | 505 | SMART | c2h2final6 | 126 | 156 | IPR013087 | - | |
Cpe02g01726 | 505 | SMART | c2h2final6 | 84 | 106 | IPR013087 | - | |
Cpe02g01726 | 505 | MobiDBLite | consensus disorder prediction | 40 | 67 | - | - | |
Cpe02g01726 | 505 | Pfam | Zinc finger, C2H2 type | 84 | 106 | IPR013087 | - | |
Cpe02g01726 | 505 | SUPERFAMILY | beta-beta-alpha zinc fingers | 83 | 181 | IPR036236 | - | |
Cpe02g01726 | 505 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 84 | 106 | IPR013087 | - | |
Cpe02g01726 | 505 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 86 | 106 | IPR013087 | - | |
Cpe02g01726 | 505 | Coils | Coil | 2 | 22 | - | - | |
Cpe02g01726 | 505 | Gene3D | Classic Zinc Finger | 138 | 218 | - | - | |
Cpe02g01726 | 505 | Gene3D | Classic Zinc Finger | 63 | 133 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g01726 | Cpe-Chr2:14127921 | Cpe03g00175 | Cpe-Chr3:867681 | 2.70E-116 | dispersed | |
Cpe12g01047 | Cpe-Chr12:8706432 | Cpe02g01726 | Cpe-Chr2:14127921 | 4.84E-107 | dispersed | |
Cpe12g00615 | Cpe-Chr12:6100750 | Cpe02g01726 | Cpe-Chr2:14127921 | 9.93E-138 | wgd | |
Cpe17g00479 | Cpe-Chr17:3563821 | Cpe02g01726 | Cpe-Chr2:14127921 | 2.88E-118 | wgd | |
Cpe02g01726 | Cpe-Chr2:14127921 | Cpe03g01066 | Cpe-Chr3:8815274 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49120 | PF00096 | zf-C2H2 | 0.0051 | CL0361 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g01726 | K25870 | - | csv:101204728 | 612.068 |