Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01726 ATGATCAAAAGTTTGTTGTTTCAAGCTCAAGCTATGGAGGAAAATTTGTCCAATTTAACTTCAGCTTCAGGTGAAGCTAGTTCCTGCTCCGGCAACCGCTCCGATCAGATTCCGACGAACTACTCCGGTGGCAATTACTTTTCTGCCCCTCCACCACCACCAAAAAGGAAAAGAAACCTCCCCGGAAATCCAGACCCAGATGCGGAGGTGGTAGCTTTATCACCGAAGACGCTGATGGCGACGAATAGATTCGTATGCGAGATCTGCAACAAAGGGTTTCAGAGAGATCAGAATCTTCAGCTTCATAGGAGAGGCCACAATTTGCCATGGAAGCTGAAGCCAAGAGCGAACAAAGAGGTGATAAGGAAGAAGGTGTATGTGTGCCCAGAAACAAGCTGTGTTCATCATGATCCATCGAGGGCTCTCGGGGACTTGACAGGAATCAAGAAGCACTTTAGCAGAAAGCACGGTGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAGGTACGCAGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGACAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTGGCAGAGGAAAGTGCAAGAAGCATTACAGCAAACCCAATACTTATGACCAATAATAACCCTCCACTACTTCCCAATCCAATTTCTTCAATCTCTCACTTCAACTTCCAACCTCAAACCCACTTCAACCCATTGGATATCAACTCGTTTGCCCTAAAAAAAGAGCACCAAAATCCACAAAGCTCAACCAATTTCATTCCCCCGTGGTTGGCTAATCATAATCAAGACCTTAATCACCTCATCATTAACCCTAATCATCTTGGGCAGACGTCTCTTAATCTTCCAACTGCTTCTTCTTCCCCTTCTCCGCACATGTCAGCCACAGCACTTCTGCAGAAAGCAGCTCAAATGGGAGCTACGATGAGCAGCAACAATAATGCAGAGGCACCACACACAATAATCAGGCCCCAACACTCTCAGGATCATCACGTGTCTGATTCGTCTGCCACCACCAATAATGCAACTTGTAATTTTGGCCTTAACTTGTCCTCCTCCTCCTCCTCACGTGACAACCAGAATCAGGTCTTGATGGGTACTGAAGCTGGTCCAGGCCTTTCTCCTGCACTGCCACTCTACAGGAACAAAACACTTGTTCAAACCACTTTCATGAACAACAACAACAACACCACCTTTTCTCCAAGTGCCTTTGAAGGGGCTTCTTTTGAAATAGATGAATTTGGAGGGATGTTGAAGAAAGATGAGATTTTTAACGACAACCCAGCAAGTGAAGGGTTGAGTACAAGAGACTTTTTGGGGCTTAGAGCAATGTCTCACACTGAGTTTTTGAGTAATATTGCAGCTGCTGGTTATGGAAATTGCATCAATGGTGGTGCTGGTCAAACCCCTCCAACTCAAATTCGAAACCAACCCAGCTGGCAAGGTTAG 1518 45.32 MIKSLLFQAQAMEENLSNLTSASGEASSCSGNRSDQIPTNYSGGNYFSAPPPPPKRKRNLPGNPDPDAEVVALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKPRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSITANPILMTNNNPPLLPNPISSISHFNFQPQTHFNPLDINSFALKKEHQNPQSSTNFIPPWLANHNQDLNHLIINPNHLGQTSLNLPTASSSPSPHMSATALLQKAAQMGATMSSNNNAEAPHTIIRPQHSQDHHVSDSSATTNNATCNFGLNLSSSSSSRDNQNQVLMGTEAGPGLSPALPLYRNKTLVQTTFMNNNNNTTFSPSAFEGASFEIDEFGGMLKKDEIFNDNPASEGLSTRDFLGLRAMSHTEFLSNIAAAGYGNCINGGAGQTPPTQIRNQPSWQG 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14127921 14130790 - Cp4.1LG02g17300.1 Cpe02g01726 465675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01726 505 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 18 474 - -
Cpe02g01726 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 474 - -
Cpe02g01726 505 SMART c2h2final6 161 181 IPR013087 -
Cpe02g01726 505 SMART c2h2final6 126 156 IPR013087 -
Cpe02g01726 505 SMART c2h2final6 84 106 IPR013087 -
Cpe02g01726 505 MobiDBLite consensus disorder prediction 40 67 - -
Cpe02g01726 505 Pfam Zinc finger, C2H2 type 84 106 IPR013087 -
Cpe02g01726 505 SUPERFAMILY beta-beta-alpha zinc fingers 83 181 IPR036236 -
Cpe02g01726 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Cpe02g01726 505 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Cpe02g01726 505 Coils Coil 2 22 - -
Cpe02g01726 505 Gene3D Classic Zinc Finger 138 218 - -
Cpe02g01726 505 Gene3D Classic Zinc Finger 63 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01726 Cpe-Chr2:14127921 Cpe03g00175 Cpe-Chr3:867681 2.70E-116 dispersed
Cpe12g01047 Cpe-Chr12:8706432 Cpe02g01726 Cpe-Chr2:14127921 4.84E-107 dispersed
Cpe12g00615 Cpe-Chr12:6100750 Cpe02g01726 Cpe-Chr2:14127921 9.93E-138 wgd
Cpe17g00479 Cpe-Chr17:3563821 Cpe02g01726 Cpe-Chr2:14127921 2.88E-118 wgd
Cpe02g01726 Cpe-Chr2:14127921 Cpe03g01066 Cpe-Chr3:8815274 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49120 PF00096 zf-C2H2 0.0051 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01726 K25870 - csv:101204728 612.068