Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01732 ATGGGAAACCAGAAGCAGAAGTGGACGCAGGAGGAGGAAGAGGCACTTTTGGCTGGCGTACAGAAGCACGGTCCAGGGAAGTGGAAGAACATTCTCAAGGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCTAACATTGACCTCAAGGATAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCCAGGACTCCCAAAGCTAAAGCTATTGTTGCTGCCTCAGTTTCTAACAACCAAAACTCTGCTCTTACTAAGTTTAATGCATCTGCTGATGCTGCAGGAGAAGATCCACCAAACAGCGCCCCACAGGATGGGAAAAATGTCCCAAGGTATCATACAATGATTTTTGAAGCTCTTTCAACCATAAAAGATTCAAATGGATGCGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTAGAAAAGATTCAGAATTGCTACAAGGTAAAGAAAGACAATTCACTGGCAGTTAAAACTCCTACACCCAAACAAAAGGATGTCAGGCAACGAATGTCGCAATATACTATGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGACGCGGCGAAAGCAGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCGGAAGCTGTGAAGGAGGCAGAGAGAATAGCAAAGATGGCTGAAGATACAGATTCTATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCGGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTTTGACTCTAAGATGAATGAGTTACTTTCAGCTGATGGACAAGATTTCTTCACCTCTTATGATGAAGTTTATGATAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGCATCTATGCTTATGGTTGTTTTAACCTCGTTTATAAAGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGGGGAATAGTTCCTTTCTGCAAAGGGCTTGATGTGATCCAACAAGCGCAGTCTGGTACGGGAAAGACTGCAACTTTCTGCTCTGGCATTTTGCAGCAGCTTGATTATGGTCTCGTGCAATGCCAGGCTCTGGTCTTAGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTGGGAGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAGTCACTTCGTCCCGACTGCATTCGAATGTTTGTGTTGGATGAGGCTGATGAGATGCTTTCACGTGGATTCAAGGATCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGCTCTTCTAGAGTCCTCATTACTACCGATCTATTGGCCCGTGGTATTGATGTGCAGCAGGTTTCTCTAGTTATTAACTATGATCTGCCAACACAACCAGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGTGTTGCCATCAACTTTGTAACTAATGAGGACGAAAGAATGCTATTTGACATTCAGAAGTTTTACAACGTGGTAATTGAAGAGCTGCCAGCTAATGTTGCTGATCTCCTGTGA 1734 43.94 MGNQKQKWTQEEEEALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRTPKAKAIVAASVSNNQNSALTKFNASADAAGEDPPNSAPQDGKNVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKIQNCYKVKKDNSLAVKTPTPKQKDVRQRMSQYTMGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQFDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGCFNLVYKGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNEDERMLFDIQKFYNVVIEELPANVADLL 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14178581 14186736 + Cp4.1LG02g17290.1 Cpe02g01732 465681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01732 577 Pfam DEAD/DEAH box helicase 342 482 IPR011545 GO:0003676|GO:0005524
Cpe02g01732 577 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe02g01732 577 PANTHER - 274 479 - -
Cpe02g01732 577 PANTHER - 478 570 - -
Cpe02g01732 577 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 521 IPR014001 -
Cpe02g01732 577 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Cpe02g01732 577 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe02g01732 577 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 464 472 IPR000629 -
Cpe02g01732 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 485 IPR027417 -
Cpe02g01732 577 SMART h15plus2 112 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe02g01732 577 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Cpe02g01732 577 SMART ultradead3 336 530 IPR014001 -
Cpe02g01732 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 573 IPR027417 -
Cpe02g01732 577 Gene3D - 8 86 - -
Cpe02g01732 577 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cpe02g01732 577 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 274 479 - -
Cpe02g01732 577 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 478 570 - -
Cpe02g01732 577 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 309 345 IPR014014 GO:0003724
Cpe02g01732 577 SMART helicmild6 466 538 IPR001650 -
Cpe02g01732 577 CDD SF2_C_DEAD 475 547 - -
Cpe02g01732 577 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cpe02g01732 577 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 378 577 IPR001650 -
Cpe02g01732 577 SMART sant 4 59 IPR001005 -
Cpe02g01732 577 Gene3D - 281 498 IPR027417 -
Cpe02g01732 577 Gene3D - 112 198 IPR036388 -
Cpe02g01732 577 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cpe02g01732 577 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00396 Cpe-Chr1:2296937 Cpe02g01732 Cpe-Chr2:14178581 1.76E-32 dispersed
Cpe02g01732 Cpe-Chr2:14178581 Cpe03g00831 Cpe-Chr3:5222609 2.64E-102 dispersed
Cpe16g00687 Cpe-Chr16:7120361 Cpe02g01732 Cpe-Chr2:14178581 4.11E-06 dispersed
Cpe19g00617 Cpe-Chr19:5052667 Cpe02g01732 Cpe-Chr2:14178581 2.03E-06 dispersed
Cpe19g00677 Cpe-Chr19:5373858 Cpe02g01732 Cpe-Chr2:14178581 4.21E-08 dispersed
Cpe11g00363 Cpe-Chr11:1999303 Cpe02g01732 Cpe-Chr2:14178581 0 transposed
Cpe12g00607 Cpe-Chr12:6047211 Cpe02g01732 Cpe-Chr2:14178581 0 wgd
Cpe17g00474 Cpe-Chr17:3530045 Cpe02g01732 Cpe-Chr2:14178581 0 wgd
Cpe02g01732 Cpe-Chr2:14178581 Cpe03g01057 Cpe-Chr3:8747520 4.11E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49121 PF00270 DEAD 1.20E-33 CL0023 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01732 K03257 K09422 csv:101202785 466.077